Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 31-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae TIGR4
- locus tag: SP_1992 [new locus tag: SP_RS10010 ]
- pan locus tag?: PNEUPAN003611000
- symbol: SP_1992
- pan gene symbol?: diiA
- synonym:
- product: cell wall surface anchor family protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SP_1992 [new locus tag: SP_RS10010 ]
- symbol: SP_1992
- product: cell wall surface anchor family protein
- replicon: chromosome
- strand: -
- coordinates: 1895473..1896138
- length: 666
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: AE005672 (1895473..1896138) NCBI
- BioCyc:
- MicrobesOnline: 117418 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_1789 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541
601
661GTGACGATTCTAGGAAAAGATACAGTTCAACAATCTGCGAAAGGTGAATCTGTAACTCAA
GAAGCTACACCAGAGTATAAGCTAGAAAATACACCAGGTGGAGATAAGGGAGGCAATACT
GGAAGCTCAGATGCTAATGCGAATGAAGGCGGTGGTAGCCAGGCGGGTGGATCAGCTCAC
ACAGGTTCACAAAACTCAGCTCAATCACAAGCTTCTAAGCAATTAGCTACTGAAAAAGAA
TCAGCTAAAAATGCCATTGAAAAAGCAGCCAAGGACAAGCAGGATGAAATCAAAGGCGCA
CCGCTTTCTGATAAAGAAAAAGCAGAACTTTTAGCAAGAGTGGAAGCAGAAAAACAAGCA
GCTCTCAAAGAGATTGAAAATGCGAAAACTATGGAAGATGTGAAGGAAGCAGAAACGATT
GGAGTGCAAGCCATTGCCATGGTTACAGTTCCTAAGAGACCAGTGGCTCCTAATGCTGCT
CCTAAGACAACAAGTGCACCGCAAGCAACTGCAGGAACAATGCAAGATGTTACCTACCAG
TCACCTGCTGGCAAACAATTACCTAACACAGGTTCAGCATCAAGTGCAGCACTTGCTAGT
CTTGGTCTAGTGGTGGCAACAAGTGGTTTTGCTTTGCTAGGAAGAAAGACTAGACGTAGA
AAATAG60
120
180
240
300
360
420
480
540
600
660
666
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SP_1992 [new locus tag: SP_RS10010 ]
- symbol: SP_1992
- description: cell wall surface anchor family protein
- length: 221
- theoretical pI: 9.38491
- theoretical MW: 22648
- GRAVY: -0.672851
⊟Function[edit | edit source]
- TIGRFAM: Cell envelope Other LPXTG cell wall anchor domain (TIGR01167; HMM-score: 26)
- TheSEED :
- Cell wall surface anchor family protein
- PFAM: B_GA (CL0598) DUF1542; Domain of Unknown Function (DUF1542) (PF07564; HMM-score: 55.4)and 3 moreno clan defined Gram_pos_anchor; LPXTG cell wall anchor motif (PF00746; HMM-score: 32.4)P-loop_NTPase (CL0023) AAA_13; AAA domain (PF13166; HMM-score: 11.1)no clan defined DUF2605; Protein of unknown function (DUF2605) (PF10792; HMM-score: 10.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cellwall
- Cytoplasmic Score: 0.01
- Cytoplasmic Membrane Score: 0.01
- Cellwall Score: 9.97
- Extracellular Score: 0.01
- Internal Helix: 1
- DeepLocPro: Cell wall & surface
- Cytoplasmic Score: 0.0001
- Cytoplasmic Membrane Score: 0.2014
- Cell wall & surface Score: 0.7575
- Extracellular Score: 0.041
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.059552
- TAT(Tat/SPI): 0.008979
- LIPO(Sec/SPII): 0.013145
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MTILGKDTVQQSAKGESVTQEATPEYKLENTPGGDKGGNTGSSDANANEGGGSQAGGSAHTGSQNSAQSQASKQLATEKESAKNAIEKAAKDKQDEIKGAPLSDKEKAELLARVEAEKQAALKEIENAKTMEDVKEAETIGVQAIAMVTVPKRPVAPNAAPKTTSAPQATAGTMQDVTYQSPAGKQLPNTGSASSAALASLGLVVATSGFALLGRKTRRRK
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- see SP_RS10010
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1789 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Indu Warrier, Nikhil Ram-Mohan, Zeyu Zhu, Ariana Hazery, Haley Echlin, Jason Rosch, Michelle M Meyer, Tim van Opijnen
The Transcriptional landscape of Streptococcus pneumoniae TIGR4 reveals a complex operon architecture and abundant riboregulation critical for growth and virulence.
PLoS Pathog: 2018, 14(12);e1007461
[PubMed:30517198] [WorldCat.org] [DOI] (I e)