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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 23-APR-2025
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae TIGR4
- locus tag: SP_RS05745 [old locus tag: SP_1166 ]
- pan locus tag?: PNEUPAN002390000
- symbol: pdrM
- pan gene symbol?: pdrM
- synonym:
- product: sodium-coupled multidrug efflux MATE transporter PdrM
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SP_RS05745 [old locus tag: SP_1166 ]
- symbol: pdrM
- product: sodium-coupled multidrug efflux MATE transporter PdrM
- replicon: chromosome
- strand: -
- coordinates: 1101437..1102798
- length: 1362
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_003028 (1101437..1102798) NCBI
- BioCyc:
- MicrobesOnline: see SP_1166
- PneumoBrowse for strain D39V: SPV_1029 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1321ATGTATAAGACAAAGTGTTTACGAGAGAAGTTAGTATTATTTTTAAAAATTTTCTTCCCA
ATCCTGATCTACCAATTTGCCAATTATTCTGCCTCTTTTGTTGATACTGCAATGACAGGT
CAATACAACACTATGGACTTGGCTGGTGTATCTATGGCAACCAGTATCTGGAATCCTTTC
TTTACATTTCTAACAGGGATTGTGTCAGCCTTGGTGCCTATCATTGGTCACCATCTTGGT
CGAGGCAAAAAGGAAGAAGTTGCGTCTGATTTTTACCAATTTATTTATTTGGCCTTGGGC
CTATCTGTGGTCTTGCTGGGGATGGTACTTTTCTTGGCACCAATAATCTTGAATCATATT
GGGTTAGAAGCAGCAGTAGCGGCAGTAGCGGTTCGCTATCTTTGGTTTTTATCTATCGGG
ATTATCCCCTTGTTGCTCTTTAGCGTCATTCGTTCCTTGCTGGATTCGCTGGGCTTGACC
AAACTGTCCATGTACCTCATGCTTTTGTTACTCCCTCTCAATAGCGGATTTAACTATCTC
TTGATTTACGGTGCCTTTGGTGTTCCAGAACTGGGAGGGGCTGGTGCTGGTTTAGGAACA
TCCTTGGCCTACTGGGTCTTGCTTGGGATTTCTGTTCTGGTTTTATTTAAACAGGAGAAG
CTCAAAGCCTTACACCTTGAGAAACGAATTCCACTTAATATGGATAAAATTAAGGAAGGA
GTTCGTTTAGGTCTGCCTATTGGGGGAACTGTCTTCGCGGAAGTGGCTATCTTTTCAGTG
GTTGGCTTGATTATGGCTAAGTTTTCGCCCTTGATTATAGCTAGTCACCAGTCAGCTATG
AACTTTTCAAGTCTTATGTACGCCTTTCCTATGAGTATCTCATCGGCTATGGCTATTGTC
GTTTCCTATGAAGTGGGAGCCAAGCGATTTGATGATGCGAAAACCTATATTGGTCTAGGA
AGATGGACTGCCCTCATTTTTGCGGCCTTCACCTTAACCTTCCTTTACATTTTTAGGGGA
AATGTGGCCAGTCTTTATGGTAACGACCCAAAATTTATCGATTTGACAGTGCGTTTTTTA
ACTTATAGTCTTTTCTTCCAGTTAGCAGATACCTTTGCGGCGCCGCTTCAGGGAATTTTG
CGGGGGTATAAGGATACAGTTATTCCTTTTTACCTTGGTTTGCTTGGTTATTGGGGCGTA
GCAATCCCTGTGCGTACGCTATTTGATTCCCTAACAGATTTTGGAGCTTATTCTTACTGG
ATCGGCTTGATTATTAGTTTGATTGTGAGCGGGGCGCTCTACCGTTGGCGTTTAACTGTG
ATTATGAAGAGATTTGAATCTTTAGCAAAATCCAAATGCTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SP_RS05745 [old locus tag: SP_1166 ]
- symbol: PdrM
- description: sodium-coupled multidrug efflux MATE transporter PdrM
- length: 453
- theoretical pI: 9.77112
- theoretical MW: 50140.5
- GRAVY: 0.792494
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Other MATE efflux family protein (TIGR00797; HMM-score: 269.4)
- TheSEED: see SP_1166
- PFAM: MviN_MATE (CL0222) MatE; MatE (PF01554; HMM-score: 198.3)and 1 morePolysacc_synt_C; Polysaccharide biosynthesis C-terminal domain (PF14667; HMM-score: 34.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 12
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0.9999
- Cell wall & surface Score: 0
- Extracellular Score: 0.0001
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.236936
- TAT(Tat/SPI): 0.001207
- LIPO(Sec/SPII): 0.014769
- predicted transmembrane helices (TMHMM): 12
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MYKTKCLREKLVLFLKIFFPILIYQFANYSASFVDTAMTGQYNTMDLAGVSMATSIWNPFFTFLTGIVSALVPIIGHHLGRGKKEEVASDFYQFIYLALGLSVVLLGMVLFLAPIILNHIGLEAAVAAVAVRYLWFLSIGIIPLLLFSVIRSLLDSLGLTKLSMYLMLLLLPLNSGFNYLLIYGAFGVPELGGAGAGLGTSLAYWVLLGISVLVLFKQEKLKALHLEKRIPLNMDKIKEGVRLGLPIGGTVFAEVAIFSVVGLIMAKFSPLIIASHQSAMNFSSLMYAFPMSISSAMAIVVSYEVGAKRFDDAKTYIGLGRWTALIFAAFTLTFLYIFRGNVASLYGNDPKFIDLTVRFLTYSLFFQLADTFAAPLQGILRGYKDTVIPFYLGLLGYWGVAIPVRTLFDSLTDFGAYSYWIGLIISLIVSGALYRWRLTVIMKRFESLAKSKC
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- StringTie [1] : pdrM < SP_RS05750 < SP_RS05755 < SP_RS05760 < SP_RS05765 < SP_RS05770 < SP_RS05775
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1029 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Indu Warrier, Nikhil Ram-Mohan, Zeyu Zhu, Ariana Hazery, Haley Echlin, Jason Rosch, Michelle M Meyer, Tim van Opijnen
The Transcriptional landscape of Streptococcus pneumoniae TIGR4 reveals a complex operon architecture and abundant riboregulation critical for growth and virulence.
PLoS Pathog: 2018, 14(12);e1007461
[PubMed:30517198] [WorldCat.org] [DOI] (I e)