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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 09-APR-2021
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae TIGR4
- locus tag: SP_RS07420 [old locus tag: SP_1507 ]
- pan locus tag?: PNEUPAN002831000
- symbol: SP_RS07420
- pan gene symbol?: atpC
- synonym:
- product: F0F1 ATP synthase subunit epsilon
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
⊟Accession numbers[edit | edit source]
- Location: NC_003028 (1416045..1416464) NCBI
- BioCyc: SP_RS07420 BioCyc
- MicrobesOnline: see SP_1507
- PneumoBrowse for strain D39V: SPV_1334 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
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361ATGGCTCAGTTAACTGTCCAGATCGTGACACCAGATGGTCTCGTCTATGATCACCATGCC
AGCTATGTATCGGTTCGAACTCTGGATGGTGAGATGGGGATCTTGCCACGACATGAAAAT
ATGATTGCGGTTTTAGCAGTTGATGAAGTAAAGGTAAAACGTATCGATGATAAAGATCAC
GTGAACTGGATTGCAGTAAACGGTGGCGTTATTGAAATTGCCAATGATATGATCACAATC
GTCGCTGACTCTGCAGAACGTGCTCGTGATATCGATATCAGTCGTGCAGAACGTGCCAAA
CTTCGTGCAGAACGTGCAATTGAAGAAGCACAAGACAAACATTTGATTGACCAAGAACGT
CGTGCTAAGATTGCTTTGCAACGTGCTATTAACCGTATTAATGTCGGAAATAGACTATAA60
120
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420
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SP_RS07420 [old locus tag: SP_1507 ]
- symbol: SP_RS07420
- description: F0F1 ATP synthase subunit epsilon
- length: 139
- theoretical pI: 6.35817
- theoretical MW: 15637.8
- GRAVY: -0.264748
⊟Function[edit | edit source]
- reaction: EC 7.1.2.2? ExPASynon-specified enzyme name
- TIGRFAM: Energy metabolism ATP-proton motive force interconversion ATP synthase F1, epsilon subunit (TIGR01216; EC 3.6.3.14; HMM-score: 98.7)and 1 morealternate F1F0 ATPase, F1 subunit epsilon (TIGR03166; EC 3.6.3.-; HMM-score: 27.2)
- TheSEED: see SP_1507
- PFAM: no clan defined ATP-synt_DE_N; ATP synthase, Delta/Epsilon chain, beta-sandwich domain (PF02823; HMM-score: 89.7)and 1 moreATP-synt_DE; ATP synthase, Delta/Epsilon chain, long alpha-helix domain (PF00401; HMM-score: 52.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.002701
- TAT(Tat/SPI): 0.000119
- LIPO(Sec/SPII): 0.000381
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MAQLTVQIVTPDGLVYDHHASYVSVRTLDGEMGILPRHENMIAVLAVDEVKVKRIDDKDHVNWIAVNGGVIEIANDMITIVADSAERARDIDISRAERAKLRAERAIEEAQDKHLIDQERRAKIALQRAINRINVGNRL
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: SP_RS07420 < atpD < SP_RS07430 < atpA < SP_RS07440 < atpF < atpB < SP_RS07455
⊟Regulation[edit | edit source]
- regulator: CcpA see SP_1507
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1334 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Tim van Opijnen, Andrew Camilli
A fine scale phenotype-genotype virulence map of a bacterial pathogen.
Genome Res: 2012, 22(12);2541-51
[PubMed:22826510] [WorldCat.org] [DOI] (I p)