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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 09-APR-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae TIGR4
  • locus tag: SP_RS10045
  • pan locus tag?: PNEUPAN000659000
  • symbol: SP_RS10045
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SP_RS10045
  • symbol: SP_RS10045
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1901687..1902250
  • length: 564
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_003028 (1901687..1902250) NCBI
  • BioCyc: SP_RS10045 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGAATACCATAGAGCGGACTAGGCGGCTGATTAAAGGCTGCGCAACACACTGTTTTGAG
    GTTGTAGATAGAACTGACGAAGTCAGCTCAAAGCACTGCTTTGAGGTTGCAGATAGAACT
    GACGAAGTCAGCTCAAAACATGTTTTTGAGGTTGTAGATGAAACTAACGAAGTCAGCTCA
    AAACATGTTTTTGAGGTTGTAGATGAAACTAACGAAGTCAGCTCAAAACATGTTTTTGAG
    GTTGTAGATAGAACTGACGAAGTCAGCTCAAAACATGTTTTTGAGGTTGTAGATAGAACT
    GACGAAGTCAGCTCAAAACATGTTTTTGAGGTTGTAGATAGAACTGACGAAGTCAGCTCA
    AAACATGTTTTTGAGGTTGTAGATAGAACTGACGAAGTCAGCTCAAAACATGTTTTTGAG
    GTTGTAGATAGAACTGACGAAGTCAGCTCAAAACATGTTTTTGAGGTTGTAGATAGAACT
    GACGAAGTCAGCTCAAAACATGTTTTTGAGGTTGTAGATGAAACTGACGAAGTCAGTAAC
    CATACATACGGTAAGGCGACGTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    564

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SP_RS10045
  • symbol: SP_RS10045
  • description: hypothetical protein
  • length: 187
  • theoretical pI: 4.52067
  • theoretical MW: 21435.2
  • GRAVY: -0.583957

⊟Function[edit | edit source]

  • TIGRFAM:
    Signal transduction Regulatory functions Other ModE molybdate transport repressor domain (TIGR00637; HMM-score: 13.6)
    EXLDI protein (TIGR04342; HMM-score: 12.6)
  • TheSEED:
  • PFAM:
    no clan defined Nup54; Nucleoporin complex subunit 54 (PF13874; HMM-score: 24.3)
    HTH (CL0123) YdaS_antitoxin; Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT (PF15943; HMM-score: 23)
    and 7 more
    TPR (CL0020) DUF5071; Domain of unknown function (DUF5071) (PF16804; HMM-score: 19)
    HTH (CL0123) DUF3895; Protein of unknown function (DUF3895) (PF13034; HMM-score: 16.4)
    no clan defined DUF1810; Protein of unknown function (DUF1810) (PF08837; HMM-score: 15.5)
    CMV_1a_C; Cucumber mosaic virus 1a protein C terminal (PF12503; HMM-score: 14.7)
    NusB (CL0633) DUF1948; Domain of unknown function (DUF1948) (PF09185; HMM-score: 13.8)
    Phage_TACs (CL0567) Phage_TAC_8; Phage tail assembly chaperone protein Gp14 ()A118 (PF10666; HMM-score: 12.7)
    no clan defined Orthopox_F6; Orthopoxvirus F6 protein (PF06601; HMM-score: 9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.00801
    • TAT(Tat/SPI): 0.001952
    • LIPO(Sec/SPII): 0.001781
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_001092024 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MNTIERTRRLIKGCATHCFEVVDRTDEVSSKHCFEVADRTDEVSSKHVFEVVDETNEVSSKHVFEVVDETNEVSSKHVFEVVDRTDEVSSKHVFEVVDRTDEVSSKHVFEVVDRTDEVSSKHVFEVVDRTDEVSSKHVFEVVDRTDEVSSKHVFEVVDRTDEVSSKHVFEVVDETDEVSNHTYGKAT

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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