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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 23-APR-2024
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae TIGR4
- locus tag: SP_RS10170 [old locus tag: SP_2009 ]
- pan locus tag?: PNEUPAN003651000
- symbol: rpmG
- pan gene symbol?: rpmG2
- synonym:
- product: 50S ribosomal protein L33
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SP_RS10170 [old locus tag: SP_2009 ]
- symbol: rpmG
- product: 50S ribosomal protein L33
- replicon: chromosome
- strand: -
- coordinates: 1915512..1915664
- length: 153
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_003028 (1915512..1915664) NCBI
- BioCyc: SP_RS10170 BioCyc
- MicrobesOnline: see SP_2009
- PneumoBrowse for strain D39V: SPV_2423 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121ATGGCACTAAAAAAAGCAAGCCTAGCTTGTGCGGTTTGTGGTTCGAGAAACTATTCAATC
AAGATCAGCGGAAACCTCAAGCCTACACGACTAGAAGTAAATAAATTTTGTAAGCATTGT
GGCAAGTACACTACACACAGAGAAACGAGATAG60
120
153
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SP_RS10170 [old locus tag: SP_2009 ]
- symbol: RpmG
- description: 50S ribosomal protein L33
- length: 50
- theoretical pI: 10.5513
- theoretical MW: 5614.61
- GRAVY: -0.522
⊟Function[edit | edit source]
- TIGRFAM: Protein synthesis Ribosomal proteins: synthesis and modification ribosomal protein bL33 (TIGR01023; HMM-score: 38.9)
- TheSEED: see SP_2009
- PFAM: Zn_Beta_Ribbon (CL0167) Ribosomal_L33; Ribosomal protein L33 (PF00471; HMM-score: 54.3)and 6 morezf-RRN7; Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 (PF11781; HMM-score: 20.1)Nudix_N_2; Nudix N-terminal (PF14803; HMM-score: 15.9)zinc_ribbon_2; zinc-ribbon domain (PF13240; HMM-score: 15.6)zf-ribbon_3; zinc-ribbon domain (PF13248; HMM-score: 13)no clan defined DUF983; Protein of unknown function (DUF983) (PF06170; HMM-score: 11.6)Zn_Beta_Ribbon (CL0167) RNA_POL_M_15KD; RNA polymerases M/15 Kd subunit (PF02150; HMM-score: 10.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.180419
- TAT(Tat/SPI): 0.008689
- LIPO(Sec/SPII): 0.040282
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MALKKASLACAVCGSRNYSIKISGNLKPTRLEVNKFCKHCGKYTTHRETR
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: nusG < secE < rpmG < pbp2a
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_2423 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.