Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 09-APR-2021
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae TIGR4
- locus tag: SP_RS10815 [old locus tag: SP_2120 ]
- pan locus tag?: PNEUPAN003701000
- symbol: SP_RS10815
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SP_RS10815 [old locus tag: SP_2120 ]
- symbol: SP_RS10815
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 2031693..2032007
- length: 315
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_003028 (2031693..2032007) NCBI
- BioCyc: SP_RS10815 BioCyc
- MicrobesOnline: see SP_2120
- PneumoBrowse for strain D39V: SPV_1948 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301ATGTGGGTACTAGGATTTATACTATTTATGATTTTCTTTTATTCTAATAATTCTAAAAAA
ATCAAGAAACTAGAGAATAAAATCAAAAGACTTGAGCGAAAAGAGAAAGGAAACGCAGAA
ATGTCGAGATTATTACAAGAAATGATTGGAAAGGAACCAATTATAACGGGAGTGTATATT
GGGCCAGATAACTGGGAAGTTGTGGATGTTGATGAGGAATGGGTAAAGCTACGACGTGTA
GATAATACGGGAAAAGAAAAATTCAAGTTGCAACGTATTGAGGATATCCAAACCGTTGAA
TTTGACGGAGAGTAG60
120
180
240
300
315
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SP_RS10815 [old locus tag: SP_2120 ]
- symbol: SP_RS10815
- description: hypothetical protein
- length: 104
- theoretical pI: 6.94071
- theoretical MW: 12411.3
- GRAVY: -0.541346
⊟Function[edit | edit source]
- reaction: EC 6.1.1.12? ExPASyAspartate--tRNA ligase ATP + L-aspartate + tRNA(Asp) = AMP + diphosphate + L-aspartyl-tRNA(Asp)
- TIGRFAM:
- TheSEED: see SP_2120
- PFAM: no clan defined LapA_dom; Lipopolysaccharide assembly protein A domain (PF06305; HMM-score: 17.1)DUF2304; Uncharacterized conserved protein (DUF2304) (PF10066; HMM-score: 16)DUF6549; Family of unknown function (DUF6549) (PF20186; HMM-score: 13.8)and 1 moreThioredoxin (CL0172) Thioredoxin_6; Thioredoxin-like domain (PF13848; HMM-score: 13.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.07042
- TAT(Tat/SPI): 0.002102
- LIPO(Sec/SPII): 0.02882
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MWVLGFILFMIFFYSNNSKKIKKLENKIKRLERKEKGNAEMSRLLQEMIGKEPIITGVYIGPDNWEVVDVDEEWVKLRRVDNTGKEKFKLQRIEDIQTVEFDGE
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1948 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.