From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 13-DEC-2020

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae INV104
  • locus tag: INV104_RS10735 [old locus tag: INV104_18300 ]
  • pan locus tag?: PNEUPAN003701000
  • symbol: INV104_RS10735
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: INV104_RS10735 [old locus tag: INV104_18300 ]
  • symbol: INV104_RS10735
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2013809..2014123
  • length: 315
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_017591 (2013809..2014123) NCBI
  • BioCyc: INV104_RS10735 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_1948 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    ATGTGGGTACTAGTATTTATACTATTTATGATTTTCTTTTATTCTAATAATTCTAAAAAA
    ATCAAGAAACTAGAGAATAAAATCAAAAAACTTGAGCGAAAAGAGAAAGGAAACGCAGAA
    ATGTCGAGATTATTGCAAGAAATGATTGGAAAGGAACCAATTATAACGGGAGTGTATATT
    GGGCCAGATAACTGGGAAGTTGTGGATGTTGATGAGGAATGGGTAAAGCTACGACGTGTA
    GATAATACGGGAAAAGAAAAATTCAAGTTGCAACGCATTGAGGATATCCAAACCGTTGAA
    TTTGACGGAGAGTAG
    60
    120
    180
    240
    300
    315

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: INV104_RS10735 [old locus tag: INV104_18300 ]
  • symbol: INV104_RS10735
  • description: hypothetical protein
  • length: 104
  • theoretical pI: 6.93952
  • theoretical MW: 12425.4
  • GRAVY: -0.491346

⊟Function[edit | edit source]

  • TIGRFAM:
    Unknown function General TIGR00374 family protein (TIGR00374; HMM-score: 11.7)
  • TheSEED: see INV104_18300
  • PFAM:
    no clan defined LapA_dom; Lipopolysaccharide assembly protein A domain (PF06305; HMM-score: 17.5)
    DUF2304; Uncharacterized conserved protein (DUF2304) (PF10066; HMM-score: 17.1)
    DUF4446; Protein of unknown function (DUF4446) (PF14584; HMM-score: 15)
    and 6 more
    Thioredoxin (CL0172) Thioredoxin_6; Thioredoxin-like domain (PF13848; HMM-score: 13.9)
    no clan defined Chordopox_G3; Chordopoxvirus G3 protein (PF06129; HMM-score: 13.6)
    Ycf70; Uncharacterized Ycf70-like (PF17382; HMM-score: 13.3)
    BRI3BP; Negative regulator of p53/TP53 (PF14965; HMM-score: 11.9)
    O-anti_assembly (CL0499) Wzy_C; O-Antigen ligase (PF04932; HMM-score: 11.7)
    no clan defined YajC; Preprotein translocase subunit (PF02699; HMM-score: 11.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.095699
    • TAT(Tat/SPI): 0.002144
    • LIPO(Sec/SPII): 0.058472
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_001812779 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MWVLVFILFMIFFYSNNSKKIKKLENKIKKLERKEKGNAEMSRLLQEMIGKEPIITGVYIGPDNWEVVDVDEEWVKLRRVDNTGKEKFKLQRIEDIQTVEFDGE

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=INV104_RS10735&oldid=94758"