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serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 04-FEB-2016

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae INV104
  • locus tag: INV104_18300 [new locus tag: INV104_RS10735 ]
  • pan locus tag?: PNEUPAN003701000
  • symbol: INV104_18300
  • pan gene symbol?: —
  • synonym:
  • product: putative membrane protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: INV104_18300 [new locus tag: INV104_RS10735 ]
  • symbol: INV104_18300
  • product: putative membrane protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2013809..2014276
  • length: 468
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGATAGATAAACTGGTCAGTAACCTACTCCTGACCTTTTTCTTTTGCAAAATGACAAAA
    ATCATAAACTTTTTGACAACTATACTTGTCAAAAAGAAAAAGATGTGTTACAATGAATTC
    AAGTTAAGAAATAGGAAGCAGAAAGGAGTTATAATGTGGGTACTAGTATTTATACTATTT
    ATGATTTTCTTTTATTCTAATAATTCTAAAAAAATCAAGAAACTAGAGAATAAAATCAAA
    AAACTTGAGCGAAAAGAGAAAGGAAACGCAGAAATGTCGAGATTATTGCAAGAAATGATT
    GGAAAGGAACCAATTATAACGGGAGTGTATATTGGGCCAGATAACTGGGAAGTTGTGGAT
    GTTGATGAGGAATGGGTAAAGCTACGACGTGTAGATAATACGGGAAAAGAAAAATTCAAG
    TTGCAACGCATTGAGGATATCCAAACCGTTGAATTTGACGGAGAGTAG
    60
    120
    180
    240
    300
    360
    420
    468

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: INV104_18300 [new locus tag: INV104_RS10735 ]
  • symbol: INV104_18300
  • description: putative membrane protein
  • length: 155
  • theoretical pI: 10.2486
  • theoretical MW: 18551
  • GRAVY: -0.274194

⊟Function[edit | edit source]

  • TIGRFAM:
    TIGR03943 family protein (TIGR03943; HMM-score: 11.6)
    Unknown function General TIGR00374 family protein (TIGR00374; HMM-score: 11.3)
  • TheSEED  :
    • hypothetical protein
  • PFAM:
    no clan defined LapA_dom; Lipopolysaccharide assembly protein A domain (PF06305; HMM-score: 17.6)
    DUF2304; Uncharacterized conserved protein (DUF2304) (PF10066; HMM-score: 17.1)
    O-anti_assembly (CL0499) Wzy_C; O-Antigen ligase (PF04932; HMM-score: 15.9)
    TPR (CL0020) DUF6377; Domain of unknown function (DUF6377) (PF19904; HMM-score: 15.5)
    no clan defined DUF4446; Protein of unknown function (DUF4446) (PF14584; HMM-score: 15.1)
    AgrB; Accessory gene regulator B (PF04647; HMM-score: 14.1)
    and 6 more
    YajC; Preprotein translocase subunit (PF02699; HMM-score: 13.8)
    PspB; Phage shock protein B (PF06667; HMM-score: 12.6)
    BRI3BP; Negative regulator of p53/TP53 (PF14965; HMM-score: 12.5)
    DUF2615; Protein of unknown function (DUF2615) (PF11027; HMM-score: 12.1)
    ABC-2 (CL0181) ABC2_membrane_2; ABC-2 family transporter protein (PF12679; HMM-score: 11.6)
    no clan defined Ycf70; Uncharacterized Ycf70-like (PF17382; HMM-score: 11.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.32
    • Cytoplasmic Membrane Score: 9.55
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helices: 2
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.009429
    • TAT(Tat/SPI): 0.00025
    • LIPO(Sec/SPII): 0.059901
  • predicted transmembrane helices (TMHMM): 2

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: CBW37511 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MIDKLVSNLLLTFFFCKMTKIINFLTTILVKKKKMCYNEFKLRNRKQKGVIMWVLVFILFMIFFYSNNSKKIKKLENKIKKLERKEKGNAEMSRLLQEMIGKEPIITGVYIGPDNWEVVDVDEEWVKLRRVDNTGKEKFKLQRIEDIQTVEFDGE

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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