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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae A026
  • locus tag: T308_06870 [new locus tag: T308_RS06985 ]
  • pan locus tag?: PNEUPAN002839000
  • symbol: T308_06870
  • pan gene symbol?: IS1239
  • synonym:
  • product: integrase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: T308_06870 [new locus tag: T308_RS06985 ]
  • symbol: T308_06870
  • product: integrase
  • replicon: chromosome
  • strand: -
  • coordinates: 1339358..1340290
  • length: 933
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    GTGTTATACTTGTTGTTCAACCACAAACACAAGAAAGGCACAGAAATGCAAGACAATTAT
    ACTACAAAAGGTAAACATTTGACAATCGATAGCCGTCGCTTAATCGAAAGATGGAAAAAA
    GAAGGGAAATCAAATAGAGAAATTGCCTCTCTACTTGGAAAAGCTCCTCAAACTATCCAC
    ACTGAAATCAAGCGTGGGACAGTCCGACAATGTCTTGGAAAAGGGCGCTTCAAAGAGGTT
    TATTCTGCCGACTATGCTCAACAGTCTTATGAAAACAATCGCAAGCGCTCGGTCAAGAAA
    TCAAGCTTGACCAAGGAACTAAAGGAAAAGATTCTCCACTATCATAACCAAAAATTTTCG
    CCTGATAAGAAACAGGCTAGCACCAACTTTAAACCTGCTGGTCAATCCATCGAACAGCGG
    TCTGAAGCTATCAATCTTCGCTTGGAGAATGGGCATTATGAGATTGATACGGTTCTACTT
    ACGAGAGCGAAAAACTACTGCTTGCTTGTCTTGACGGATCGAAAGAGTAGACATCAGATC
    ATCCGATTGATTCCAAATAAAAGTGCTGAGGTGGTCAATCAGGCTCTAAAACTCATCTTA
    AAACAACACAAGATTCTTTCCATCACGGCAGATAATGGAACGGAATTCAATCGCTTGTTT
    GATGTATTTTCTGAGGAGCACATCTATTATGCGCACCCCTATGCCTCTTGGGAAAGGGGA
    ACTAATGAGAATCACAACAGGCTCATTCGTAGATGGTTACCTAAGGGAACCAAGAAAATG
    ACTCCCAAAGAAGTCGCATTCATCGAAAAGTGGATTAACAACTATCCTAAAAAATGCTTG
    GACTACAAGTCACCCAGAGAAGACTTCTGGATGGCTAACTTGAACTTGAAATTTAGCAAA
    ATGGAAATAATTTTTATTAAACGCTTCCAATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    933

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: T308_06870 [new locus tag: T308_RS06985 ]
  • symbol: T308_06870
  • description: integrase
  • length: 310
  • theoretical pI: 10.556
  • theoretical MW: 36726.1
  • GRAVY: -0.861613

⊟Function[edit | edit source]

  • TIGRFAM:
    RNA polymerase sigma-70 factor, Bacteroides expansion family 1 (TIGR02985; HMM-score: 17)
    transcriptional regulator EpsA (TIGR03020; HMM-score: 15.4)
    RNA polymerase sigma factor, sigma-70 family (TIGR02937; HMM-score: 14.4)
    and 1 more
    RNA polymerase sigma-70 factor, TIGR02960 family (TIGR02960; HMM-score: 12.3)
  • TheSEED: data available for D39, Hungary19A-6
  • PFAM:
    HTH (CL0123) HTH_38; Helix-turn-helix domain (PF13936; HMM-score: 62.8)
    and 4 more
    RNase_H (CL0219) rve; Integrase core domain (PF00665; HMM-score: 21.6)
    HTH (CL0123) Sigma70_r4_2; Sigma-70, region 4 (PF08281; HMM-score: 18.3)
    HTH_23; Homeodomain-like domain (PF13384; HMM-score: 16.4)
    GerE; Bacterial regulatory proteins, luxR family (PF00196; HMM-score: 13.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005457
    • TAT(Tat/SPI): 0.001517
    • LIPO(Sec/SPII): 0.001165
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: AGZ48073 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MLYLLFNHKHKKGTEMQDNYTTKGKHLTIDSRRLIERWKKEGKSNREIASLLGKAPQTIHTEIKRGTVRQCLGKGRFKEVYSADYAQQSYENNRKRSVKKSSLTKELKEKILHYHNQKFSPDKKQASTNFKPAGQSIEQRSEAINLRLENGHYEIDTVLLTRAKNYCLLVLTDRKSRHQIIRLIPNKSAEVVNQALKLILKQHKILSITADNGTEFNRLFDVFSEEHIYYAHPYASWERGTNENHNRLIRRWLPKGTKKMTPKEVAFIEKWINNYPKKCLDYKSPREDFWMANLNLKFSKMEIIFIKRFQ

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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