From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 17-JAN-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae A026
  • locus tag: T308_RS08985 [old locus tag: T308_08800 ]
  • pan locus tag?: PNEUPAN003445000
  • symbol: groL
  • pan gene symbol?: groEL
  • synonym:
  • product: chaperonin GroEL

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: T308_RS08985 [old locus tag: T308_08800 ]
  • symbol: groL
  • product: chaperonin GroEL
  • replicon: chromosome
  • strand: -
  • coordinates: 1704764..1706386
  • length: 1623
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_022655 (1704764..1706386) NCBI
  • BioCyc: T308_RS08985 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_1709 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    ATGTCAAAAGAAATTAAATTTTCATCAGATGCCCGTTCAGCCATGGTTCGTGGTGTCGAT
    ATCCTTGCAGACACTGTTAAAGTAACCTTGGGACCAAAAGGTCGCAATGTCGTTCTTGAA
    AAGTCATTCGGTTCACCCTTGATTACCAATGACGGTGTGACCATTGCCAAAGAAATCGAA
    TTGGAAGACCATTTTGAAAATATGGGTGCTAAGTTAGTATCAGAAGTAGCTTCTAAAACC
    AATGATATCGCAGGTGACGGAACTACGACTGCAACAGTCTTGACCCAAGCTATCGTCCGT
    GAAGGAATCAAAAACGTCACAGCAGGTGCAAATCCAATCGGTATTCGTCGTGGGATTGAA
    ACAGCAGTTGCCGCAGCAGTTGAAGCTTTGAAAAACAACGCCATCCCTGTTGCCAATAAA
    GAAGCTATCGCTCAAGTTGCAGCCGTATCTTCTCGTTCTGAAAAAGTTGGTGAGTACATC
    TCTGAAGCAATGGAAAAAGTTGGCAAAGACGGTGTCATCACCATCGAAGAGTCACGTGGT
    ATGGAAACAGAGCTTGAAGTCGTAGAAGGAATGCAGTTTGACCGTGGTTACCTTTCACAG
    TACATGGTGACAGATAGCGAAAAAATGGTGGCTGACCTTGAAAATCCGTACATTTTGATT
    ACAGACAAGAAAATTTCCAATATCCAAGAAATCTTGCCACTTTTGGAAAGCATTCTCCAA
    AGCAATCGTCCACTCTTGATTATTGCGGATGATGTGGATGGTGAGGCTCTTCCAACTCTT
    GTTTTGAACAAGATTCGTGGAACCTTCAACGTAGTAGCAGTCAAGGCACCTGGTTTTGGT
    GACCGTCGCAAAGCCATGCTTGAAGATATCGCCATCTTAACAGGCGGAACAGTTATCACA
    GAAGACCTTGGTCTTGAGTTGAAAGATGCGACAATTGAAGCTCTTGGTCAAGCAGCGAGA
    GTGACCGTGGACAAAGATAGCACGGTTATTGTAGAAGGTGCAGGAAATCCTGAAGCGATT
    TCTCACCGTGTTGCGGTTATCAAGTCTCAAATCGAAACTACAACTTCTGAATTTGACCGT
    GAAAAATTGCAAGAACGCTTGGCCAAATTGTCAGGTGGTGTAGCGGTTATTAAGGTCGGA
    GCCGCAACTGAAACTGAGTTGAAAGAAATGAAACTCCGCATTGAAGATGCCCTCAACGCT
    ACTCGTGCAGCTGTTGAAGAAGGTATTGTTGCAGGTGGTGGAACAGCTCTTGCCAATGTG
    ATTCCAGCTGTTGCTACCTTGGAATTGACAGGAGATGAAGCAACAGGACGTAATATTGTT
    CTCCGTGCTTTGGAAGAACCCGTTCGTCAAATTGCTCACAATGCAGGATTTGAAGGATCT
    ATCGTTATCGATCGTTTGAAAAATGCTGAGCTTGGTATAGGATTTAACGCAGCAACTGGC
    GAGTGGGTTAACATGATTGATCAAGGTATCATTGATCCAGTTAAAGTGAGTCGTTCAGCC
    CTACAAAATGCAGCATCTGTAGCCAGCTTGATTTTGACAACAGAAGCAGTCGTAGCCAAT
    AAACCAGAACCAGTAGCCCCAGCTCCAGCAATGGATCCAAGCATGATGGGCGGGATGATG
    TAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1623

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: T308_RS08985 [old locus tag: T308_08800 ]
  • symbol: GroL
  • description: chaperonin GroEL
  • length: 540
  • theoretical pI: 4.47782
  • theoretical MW: 57095
  • GRAVY: 0.0451852

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein fate Protein folding and stabilization chaperonin GroL (TIGR02348; HMM-score: 837.4)
    and 9 more
    Genetic information processing Protein fate Protein folding and stabilization thermosome, various subunits, archaeal (TIGR02339; HMM-score: 116.2)
    T-complex protein 1, beta subunit (TIGR02341; HMM-score: 87.3)
    T-complex protein 1, eta subunit (TIGR02345; HMM-score: 83.2)
    T-complex protein 1, delta subunit (TIGR02342; HMM-score: 83.1)
    T-complex protein 1, zeta subunit (TIGR02347; HMM-score: 77.9)
    T-complex protein 1, epsilon subunit (TIGR02343; HMM-score: 69.7)
    T-complex protein 1, gamma subunit (TIGR02344; HMM-score: 66.7)
    T-complex protein 1, theta subunit (TIGR02346; HMM-score: 51.5)
    T-complex protein 1, alpha subunit (TIGR02340; HMM-score: 47.7)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    no clan defined Cpn60_TCP1; TCP-1/cpn60 chaperonin family (PF00118; HMM-score: 343.6)
    and 1 more
    Ferritin (CL0044) DUF4142; Domain of unknown function (DUF4142) (PF13628; HMM-score: 13.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004271
    • TAT(Tat/SPI): 0.000531
    • LIPO(Sec/SPII): 0.000712
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000031573 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MSKEIKFSSDARSAMVRGVDILADTVKVTLGPKGRNVVLEKSFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGIKNVTAGANPIGIRRGIETAVAAAVEALKNNAIPVANKEAIAQVAAVSSRSEKVGEYISEAMEKVGKDGVITIEESRGMETELEVVEGMQFDRGYLSQYMVTDSEKMVADLENPYILITDKKISNIQEILPLLESILQSNRPLLIIADDVDGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGTVITEDLGLELKDATIEALGQAARVTVDKDSTVIVEGAGNPEAISHRVAVIKSQIETTTSEFDREKLQERLAKLSGGVAVIKVGAATETELKEMKLRIEDALNATRAAVEEGIVAGGGTALANVIPAVATLELTGDEATGRNIVLRALEEPVRQIAHNAGFEGSIVIDRLKNAELGIGFNAATGEWVNMIDQGIIDPVKVSRSALQNAASVASLILTTEAVVANKPEPVAPAPAMDPSMMGGMM

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=T308_RS08985&oldid=33294"