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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae A026
  • locus tag: T308_07295 [new locus tag: T308_RS07440 ]
  • pan locus tag?: PNEUPAN002986000
  • symbol: T308_07295
  • pan gene symbol?: rpsO_1
  • synonym:
  • product: 30S ribosomal protein S15

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: T308_07295 [new locus tag: T308_RS07440 ]
  • symbol: T308_07295
  • product: 30S ribosomal protein S15
  • replicon: chromosome
  • strand: -
  • coordinates: 1427598..1428074
  • length: 477
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGGCAAAAGAACCGTGGCAAGAAGATATCTATGATCAAGAAGAATCAAGAGCAGAGCGT
    CGGCATCGAAACCACGGAGGGGCTGATAGGATGGCTAATCGTATTTTGACGATCCTAGCT
    AGTATTTTCTTTGTAATTGTGGTGGTGATGGTCATCGTTCTCATCTATCTATCATCGGGG
    GGGAGTAATCGCACAGCAGCCTTAAAAGACTTTCATGATTCTGATGCAAGTGTAGTACAA
    ATCTCATCTTCAAGCAGTTCTCAGCCTGAGCAGAGTTCAGAGCCAGAATCTACTTCTAGT
    AGTTCAGAAGAAGCTGCTAATCCTGAAGGAACGATTAAAGTTCTCGCAGGAGAAGGGGAA
    GCAGCTATTGCCGCTCGTGCAGGAATCTCCATTGCTCAGTTAGAGGCCTTGAATCCTGGG
    CACATGGCTACAGGATCTTGGTTTGCTAATCCAGGTGATGTTATAAAAATAAAATAG
    60
    120
    180
    240
    300
    360
    420
    477

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: T308_07295 [new locus tag: T308_RS07440 ]
  • symbol: T308_07295
  • description: 30S ribosomal protein S15
  • length: 158
  • theoretical pI: 4.67063
  • theoretical MW: 16869.7
  • GRAVY: -0.209494

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    Cellular processes Cellular processes Pathogenesis type III secretion apparatus protein PrgH/EprH (TIGR02554; HMM-score: 15.7)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type III secretion apparatus protein PrgH/EprH (TIGR02554; HMM-score: 15.7)
    variant surface antigen, rifin family (TIGR01477; HMM-score: 13.9)
    and 1 more
    Metabolism Transport and binding proteins Other Niemann-Pick C type protein family (TIGR00917; HMM-score: 10.8)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • ⊞PFAM:
    no clan defined SecG; Preprotein translocase SecG subunit (PF03840; HMM-score: 16.6)
    VSA (CL0656) RIFIN; Rifin (PF02009; HMM-score: 15.8)
    no clan defined Viral_Beta_CD; Viral Beta C/D like family (PF04530; HMM-score: 14.9)
    MSP1a; Major surface protein 1a (MSP1a) (PF11670; HMM-score: 14.9)
    DUF1673; Protein of unknown function (DUF1673) (PF07895; HMM-score: 14.7)
    LysM (CL0187) LysM; LysM domain (PF01476; HMM-score: 14.3)
    no clan defined ODV-E18; Occlusion-derived virus envelope protein ODV-E18 (PF10717; HMM-score: 14.1)
    Orf78; Orf78 (ac78) (PF06024; HMM-score: 13.3)
    and 8 more
    Shisa; Wnt and FGF inhibitory regulator (PF13908; HMM-score: 13.1)
    DUF4519; Domain of unknown function (DUF4519) (PF15012; HMM-score: 12.8)
    MRAP; Melanocortin-2 receptor accessory protein family (PF15183; HMM-score: 12.6)
    DUF4834; Domain of unknown function (DUF4834) (PF16118; HMM-score: 12.6)
    OB (CL0021) tRNA_anti-like; tRNA_anti-like (PF12869; HMM-score: 12.1)
    no clan defined ASFV_J13L; African swine fever virus J13L protein (PF05568; HMM-score: 11.4)
    SCAI; Protein SCAI (PF12070; HMM-score: 11.4)
    4HB_MCP (CL0457) TarH; Tar ligand binding domain homologue (PF02203; HMM-score: 11.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helix: 1
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001894
    • TAT(Tat/SPI): 0.000252
    • LIPO(Sec/SPII): 0.001165
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: AGZ48152 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MAKEPWQEDIYDQEESRAERRHRNHGGADRMANRILTILASIFFVIVVVMVIVLIYLSSGGSNRTAALKDFHDSDASVVQISSSSSSQPEQSSEPESTSSSSEEAANPEGTIKVLAGEGEAAIAARAGISIAQLEALNPGHMATGSWFANPGDVIKIK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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