From PneumoWiki
Revision as of 15:56, 20 January 2022 by Robot (talk | contribs) (Created page with "<protect> <pneumodatabase>annotation</pneumodatabase> =Summary= *<pneumodatabase>organism</pneumodatabase> *<pneumodatabase>locus</pneumodatabase> *<pneumodatabase>pan locus...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 30-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae G54
  • locus tag: SPG_2092 [new locus tag: SPG_RS10465 ]
  • pan locus tag?: PNEUPAN003826000
  • symbol: SPG_2092
  • pan gene symbol?: pepV
  • synonym:
  • product: Peptidase family M20/M25/M40

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPG_2092 [new locus tag: SPG_RS10465 ]
  • symbol: SPG_2092
  • product: Peptidase family M20/M25/M40
  • replicon: chromosome
  • strand: +
  • coordinates: 1981187..1982518
  • length: 1332
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGAAAATAGATATAACAAATCAAGTTAAAGATGAATTTCTTATATCATTAAAAACCTTG
    ATTTCCTATCCTTCAGTACTCAATGAAGGAGAAAATGGAACACCTTTTGGACAAGCAATC
    CAAGATGTCCTAGAAAAAACTTTAGAGATTTGTCGAGACATAGGTTTCACTACCTATCTT
    GACCCTAAAGGTTATTACGGATATGCAGAAATCGGTCAGGGAGCAGAGCTTCTGGCCATT
    CTCTGTCATTTGGATGTTGTTCCATCAGGTGATGAAGCAGATTGGCAGACACCGCCATTT
    GAAGCAACTATCAAAGACGGCTGGGTATTCGGACGTGGTGTCCAAGATGATAAAGGCCCT
    TCGCTCGCAGCTCTCTATGCAGTAAAAAGCTTGCTGGACCAAGGTATTCAGTTCAAAAAG
    CGCGTACGCTTTATCTTTGGTACCGATGAGGAAACCCTCTGGCGCTGCATGGCACGCTAC
    AATACCATCGAAGAACAGGCCAGTATGGGCTTTGCACCTGACTCATCTTTTCCTCTGACC
    TATGCTGAAAAAGGGCTTCTACAGGTCAAACTTCATGGCCCTGGATCGGATCAACTAGAG
    CTTGAAGTAGGAGGCGCCTTTAACGTTGTACCAGACAAGGCCAACTACCAAGGTCTCCTC
    TATGAACAGGTTTGTAACGGTCTCAAAGAAGCTGGTTATGATTACCAAACCACTGAACAA
    ACCGTAACGGTTCTCGGAGTGCCAAAGCATGCTAAGAATGCTAGTCAAGGTATCAATGCT
    GTCATCCGACTAGCTACCATTCTTGCTCCTCTCCAAGAACACCCTGCTCTCAGCTTTCTT
    GCAACACAAGCAGGTCAAGACGGCACAGGAAGACAAATCTTTGGTGATATAGCAGATGAA
    CCTTCTGGTCACCTATCCTTTAATGTCGCAGGTCTCATGATCAATCATGAACGTTCTGAA
    ATCCGTATTGACATTCGGACTCCTGTCTTAGCTGACAAGGAAGAACTAGTAGAGTTGCTT
    ACAAGATGTGCACAAAACTACCAACTCCGCTACGAAGAGTTTGACTATCTAGCGCCTCTA
    TACGTCGCAAAAGACAGTAAACTCGTTAGCACACTGATGCAAATCTACCAAGAAAAGACT
    GGCGATAACAGTCCTGCTATTTCATCCGGTGGTGCCACTTTTGCTCGCACCATGCCAAAT
    TGTGTAGCCTTCGGCGCCTTATTCCCAGGAGCGAAGCAGACAGAACATCAGGCAAATGAA
    TGTGCCGTTCTAGAAGATTTGTACCGTGCTATGGATATTTATGCCGAAGCCGTCTATCGA
    CTTGCAACTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1332

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPG_2092 [new locus tag: SPG_RS10465 ]
  • symbol: SPG_2092
  • description: Peptidase family M20/M25/M40
  • length: 443
  • theoretical pI: 4.45684
  • theoretical MW: 48812.9
  • GRAVY: -0.196163

⊟Function[edit | edit source]

  • reaction:
    EC 3.4.-.-?  ExPASy
  • ⊞TIGRFAM:
    putative dipeptidase (TIGR01887; EC 3.4.13.-; HMM-score: 524.1)
    and 12 more
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides dipeptidase PepV (TIGR01886; EC 3.4.13.-; HMM-score: 248.4)
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides peptidase, ArgE/DapE family (TIGR01910; EC 3.4.-.-; HMM-score: 128.8)
    Metabolism Amino acid biosynthesis Aspartate family succinyl-diaminopimelate desuccinylase (TIGR01246; EC 3.5.1.18; HMM-score: 87.7)
    putative selenium metabolism hydrolase (TIGR03526; HMM-score: 65.6)
    Metabolism Amino acid biosynthesis Glutamate family acetylornithine deacetylase (ArgE) (TIGR01892; EC 3.5.1.16; HMM-score: 57.7)
    N-acyl-L-amino-acid amidohydrolase (TIGR01880; EC 3.5.1.14; HMM-score: 49.9)
    N-acetyl-ornithine/N-acetyl-lysine deacetylase (TIGR01902; HMM-score: 42.1)
    Metabolism Amino acid biosynthesis Aspartate family succinyl-diaminopimelate desuccinylase (TIGR01900; EC 3.5.1.18; HMM-score: 25.3)
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides amidohydrolase (TIGR01891; HMM-score: 16.7)
    Xaa-His dipeptidase (TIGR01893; EC 3.4.13.20; HMM-score: 14.4)
    amidase, hydantoinase/carbamoylase family (TIGR01879; EC 3.5.-.-; HMM-score: 14.3)
    peptidase T-like protein (TIGR01883; HMM-score: 13.2)
  • TheSEED  :
    • Xaa-His dipeptidase (EC 3.4.13.3)
  • ⊞PFAM:
    Peptidase_MH (CL0035) Peptidase_M20; Peptidase family M20/M25/M40 (PF01546; HMM-score: 108.3)
    and 2 more
    Peptidase_M28; Peptidase family M28 (PF04389; HMM-score: 16.7)
    no clan defined M20_dimer; Peptidase dimerisation domain (PF07687; HMM-score: 16.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.01633
    • TAT(Tat/SPI): 0.000968
    • LIPO(Sec/SPII): 0.001416
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ACF55745 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKIDITNQVKDEFLISLKTLISYPSVLNEGENGTPFGQAIQDVLEKTLEICRDIGFTTYLDPKGYYGYAEIGQGAELLAILCHLDVVPSGDEADWQTPPFEATIKDGWVFGRGVQDDKGPSLAALYAVKSLLDQGIQFKKRVRFIFGTDEETLWRCMARYNTIEEQASMGFAPDSSFPLTYAEKGLLQVKLHGPGSDQLELEVGGAFNVVPDKANYQGLLYEQVCNGLKEAGYDYQTTEQTVTVLGVPKHAKNASQGINAVIRLATILAPLQEHPALSFLATQAGQDGTGRQIFGDIADEPSGHLSFNVAGLMINHERSEIRIDIRTPVLADKEELVELLTRCAQNYQLRYEEFDYLAPLYVAKDSKLVSTLMQIYQEKTGDNSPAISSGGATFARTMPNCVAFGALFPGAKQTEHQANECAVLEDLYRAMDIYAEAVYRLAT

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • ⊞regulators: AhrC* (activation (repression)) regulon, CcpA* regulon, ArgR1/ArgR* (activation (repression)) regulon

⊟Expression data[edit | edit source]

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPG_2092&oldid=75076"