Navigation

  • Main page
  • Downloads
  • Strains
  • Getting Started
  • Recent changes
  • Random page
  • What links here
  • Related changes
  • Special pages
  • Printable version
  • Permanent link
  • Page information

personal-loginout

  • Log in
  • Not logged in
  • Talk
  • Contributions
  • Create account

Search

?

Navigation menu

Namespaces
  • Page
  • Discussion
English
From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 02-APR-2024

Views
  • Read
  • Edit
  • History
  • Edit source

⊟Summary[edit | edit source]

Contents

  • 1 Summary
  • 2 Genome View
  • 3 Gene
    • 3.1 General
    • 3.2 Accession numbers
    • 3.3 Phenotype
    • 3.4 DNA sequence
  • 4 Protein
    • 4.1 General
    • 4.2 Function
    • 4.3 Structure, modifications & cofactors
    • 4.4 Localization
    • 4.5 Accession numbers
    • 4.6 Protein sequence
    • 4.7 Experimental data
  • 5 Expression & Regulation
    • 5.1 Operon
    • 5.2 Regulation
    • 5.3 Expression data
  • 6 Biological Material
    • 6.1 Mutants
    • 6.2 Expression vector
    • 6.3 lacZ fusion
    • 6.4 GFP fusion
    • 6.5 two-hybrid system
    • 6.6 FLAG-tag construct
    • 6.7 Antibody
  • 7 Other Information
  • 8 Literature
    • 8.1 References
    • 8.2 Relevant publications
  • organism: Streptococcus pneumoniae Xen35
  • locus tag: CXP32_RS07500 [old locus tag: CXP32_07500 ]
  • pan locus tag?: PNEUPAN002846000
  • symbol: CXP32_RS07500
  • pan gene symbol?: atpC
  • synonym:
  • product: F0F1 ATP synthase subunit epsilon

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: CXP32_RS07500 [old locus tag: CXP32_07500 ]
  • symbol: CXP32_RS07500
  • product: F0F1 ATP synthase subunit epsilon
  • replicon: chromosome
  • strand: -
  • coordinates: 1416048..1416467
  • length: 420
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NZ_CP025256 (1416048..1416467) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_1334 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGGCTCAGTTAACTGTCCAGATCGTGACACCAGATGGTCTCGTCTATGATCACCATGCC
    AGCTATGTATCGGTTCGAACTCTGGATGGTGAGATGGGGATCTTGCCACGACATGAAAAT
    ATGATTGCGGTTTTAGCAGTTGATGAAGTAAAGGTAAAACGTATCGATGATAAAGATCAC
    GTGAACTGGATTGCAGTAAACGGTGGCGTTATTGAAATTGCCAATGATATGATCACAATC
    GTCGCTGACTCTGCAGAACGTGCTCGTGATATCGATATCAGTCGTGCAGAACGTGCCAAA
    CTTCGTGCAGAACGTGCAATTGAAGAAGCACAAGACAAACATTTGATTGACCAAGAACGT
    CGTGCTAAGATTGCTTTGCAACGTGCTATTAACCGTATTAATGTCGGAAATAGACTATAA
    60
    120
    180
    240
    300
    360
    420

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: CXP32_RS07500 [old locus tag: CXP32_07500 ]
  • symbol: CXP32_RS07500
  • description: F0F1 ATP synthase subunit epsilon
  • length: 139
  • theoretical pI: 6.35817
  • theoretical MW: 15637.8
  • GRAVY: -0.264748

⊟Function[edit | edit source]

  • ⊞reaction:
    EC 7.1.2.2?  ExPASy
    non-specified enzyme name
  • ⊞TIGRFAM:
    Metabolism Energy metabolism ATP-proton motive force interconversion ATP synthase F1, epsilon subunit (TIGR01216; EC 3.6.3.14; HMM-score: 98.7)
    and 1 more
    alternate F1F0 ATPase, F1 subunit epsilon (TIGR03166; EC 3.6.3.-; HMM-score: 27.2)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • ⊞PFAM:
    no clan defined ATP-synt_DE_N; ATP synthase, Delta/Epsilon chain, beta-sandwich domain (PF02823; HMM-score: 89.7)
    and 1 more
    ATP-synt_DE; ATP synthase, Delta/Epsilon chain, long alpha-helix domain (PF00401; HMM-score: 52.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002701
    • TAT(Tat/SPI): 0.000119
    • LIPO(Sec/SPII): 0.000381
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000068050 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MAQLTVQIVTPDGLVYDHHASYVSVRTLDGEMGILPRHENMIAVLAVDEVKVKRIDDKDHVNWIAVNGGVIEIANDMITIVADSAERARDIDISRAERAKLRAERAIEEAQDKHLIDQERRAKIALQRAINRINVGNRL

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • data available for TIGR4

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V: SPV_1334 PneumoExpress

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=CXP32_RS07500&oldid=172956"
  • This page was last edited on 20 January 2022, at 19:47.
  • Privacy and Cookies
  • About PneumoWiki
  • Imprint
We use Matomo for user statistics and cookies. Privacy and Cookies X
CancelTry again