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From PneumoWiki
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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 15-DEC-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae 670-6B
  • locus tag: SP670_RS01470 [old locus tag: SP670_0294 ]
  • pan locus tag?: PNEUPAN000971000
  • symbol: rplX
  • pan gene symbol?: rplX
  • synonym:
  • product: 50S ribosomal protein L24

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SP670_RS01470 [old locus tag: SP670_0294 ]
  • symbol: rplX
  • product: 50S ribosomal protein L24
  • replicon: chromosome
  • strand: +
  • coordinates: 255221..255526
  • length: 306
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_014498 (255221..255526) NCBI
  • BioCyc: SP670_RS01470 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_0204 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    ATGTTTGTAAAAAAAGGCGACAAAGTTCGCGTAATCGCTGGTAAAGATAAGGGAACAGAA
    GCTGTTGTCCTTACTGCCCTTCCAAAAGTAAACAAAGTTATCGTTGAAGGTGTTAACATT
    GTTAAGAAACACCAACGTCCAACTAACGAGCTTCCTCAAGGTGGTATCATCGAGAAAGAA
    GCAGCTATCCACGTATCAAACGTTCAAGTTTTGGACAAAAATGGTGTAGCTGGTCGTGTT
    GGTTACAAATTTGTAGACGGTAAAAAAGTTCGCTACAACAAAAAATCAGGCGAAGTGCTT
    GATTAA
    60
    120
    180
    240
    300
    306

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SP670_RS01470 [old locus tag: SP670_0294 ]
  • symbol: RplX
  • description: 50S ribosomal protein L24
  • length: 101
  • theoretical pI: 10.6257
  • theoretical MW: 10990.8
  • GRAVY: -0.320792

⊟Function[edit | edit source]

  • ⊞⊞TIGRFAM:
    Genetic information processing Protein synthesis Ribosomal proteins: synthesis and modification ribosomal protein uL24 (TIGR01079; HMM-score: 117.7)
    and 3 more
    Genetic information processing Protein synthesis Ribosomal proteins: synthesis and modification ribosomal protein uL24 (TIGR01080; HMM-score: 20.1)
    Hypothetical proteins Conserved conserved hypothetical protein (TIGR03833; HMM-score: 13.2)
    Genetic information processing Transcription Transcription factors transcription elongation factor/antiterminator RfaH (TIGR01955; HMM-score: 12.7)
  • TheSEED: see SP670_0294
  • ⊞⊞PFAM:
    no clan defined ribosomal_L24; Ribosomal proteins 50S L24/mitochondrial 39S L24 (PF17136; HMM-score: 90.6)
    and 3 more
    KOW (CL0107) KOW; KOW motif (PF00467; HMM-score: 28.2)
    no clan defined YjhX_toxin; Putative toxin of bacterial toxin-antitoxin pair (PF09857; HMM-score: 12.3)
    DUF2196; Uncharacterized conserved protein (DUF2196) (PF09962; HMM-score: 10.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.67
    • Cytoplasmic Membrane Score: 0.01
    • Cellwall Score: 0.15
    • Extracellular Score: 0.17
    • Internal Helices: 0
  • ⊞⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004393
    • TAT(Tat/SPI): 0.000207
    • LIPO(Sec/SPII): 0.001378
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000497691 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MFVKKGDKVRVIAGKDKGTEAVVLTALPKVNKVIVEGVNIVKKHQRPTNELPQGGIIEKEAAIHVSNVQVLDKNGVAGRVGYKFVDGKKVRYNKKSGEVLD

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SP670_RS01470&oldid=17987"
Insert paragraph

NCBI: 15-DEC-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae 670-6B
  • locus tag: SP670_RS01470 [old locus tag: SP670_0294 ]
  • pan locus tag?: PNEUPAN000971000
  • symbol: rplX
  • pan gene symbol?: rplX
  • synonym:
  • product: 50S ribosomal protein L24

Insert paragraph

⊟Genome View[edit | edit source]

Insert paragraph

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SP670_RS01470 [old locus tag: SP670_0294 ]
  • symbol: rplX
  • product: 50S ribosomal protein L24
  • replicon: chromosome
  • strand: +
  • coordinates: 255221..255526
  • length: 306
  • essential: unknown

Insert paragraph

⊟Accession numbers[edit | edit source]

  • Location: NC_014498 (255221..255526) NCBI
  • BioCyc: SP670_RS01470 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_0204 PneumoBrowse

Insert paragraph

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    ATGTTTGTAAAAAAAGGCGACAAAGTTCGCGTAATCGCTGGTAAAGATAAGGGAACAGAA
    GCTGTTGTCCTTACTGCCCTTCCAAAAGTAAACAAAGTTATCGTTGAAGGTGTTAACATT
    GTTAAGAAACACCAACGTCCAACTAACGAGCTTCCTCAAGGTGGTATCATCGAGAAAGAA
    GCAGCTATCCACGTATCAAACGTTCAAGTTTTGGACAAAAATGGTGTAGCTGGTCGTGTT
    GGTTACAAATTTGTAGACGGTAAAAAAGTTCGCTACAACAAAAAATCAGGCGAAGTGCTT
    GATTAA
    60
    120
    180
    240
    300
    306

Insert paragraph

This data comes from external databases and cannot be edited.

Insert paragraph

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SP670_RS01470 [old locus tag: SP670_0294 ]
  • symbol: RplX
  • description: 50S ribosomal protein L24
  • length: 101
  • theoretical pI: 10.6257
  • theoretical MW: 10990.8
  • GRAVY: -0.320792

Insert paragraph

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    Genetic information processing Protein synthesis Ribosomal proteins: synthesis and modification ribosomal protein uL24 (TIGR01079; HMM-score: 117.7)
    and 3 more
    Genetic information processing Protein synthesis Ribosomal proteins: synthesis and modification ribosomal protein uL24 (TIGR01080; HMM-score: 20.1)
    Hypothetical proteins Conserved conserved hypothetical protein (TIGR03833; HMM-score: 13.2)
    Genetic information processing Transcription Transcription factors transcription elongation factor/antiterminator RfaH (TIGR01955; HMM-score: 12.7)
  • TheSEED: see SP670_0294
  • ⊞PFAM:
    no clan defined ribosomal_L24; Ribosomal proteins 50S L24/mitochondrial 39S L24 (PF17136; HMM-score: 90.6)
    and 3 more
    KOW (CL0107) KOW; KOW motif (PF00467; HMM-score: 28.2)
    no clan defined YjhX_toxin; Putative toxin of bacterial toxin-antitoxin pair (PF09857; HMM-score: 12.3)
    DUF2196; Uncharacterized conserved protein (DUF2196) (PF09962; HMM-score: 10.2)

Insert paragraph

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Insert paragraph

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.67
    • Cytoplasmic Membrane Score: 0.01
    • Cellwall Score: 0.15
    • Extracellular Score: 0.17
    • Internal Helices: 0
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004393
    • TAT(Tat/SPI): 0.000207
    • LIPO(Sec/SPII): 0.001378
  • predicted transmembrane helices (TMHMM): 0

Insert paragraph

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000497691 NCBI
  • UniProt:

Insert paragraph

⊟Protein sequence[edit | edit source]

  • MFVKKGDKVRVIAGKDKGTEAVVLTALPKVNKVIVEGVNIVKKHQRPTNELPQGGIIEKEAAIHVSNVQVLDKNGVAGRVGYKFVDGKKVRYNKKSGEVLD

Insert paragraph

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

Insert paragraph

⊟Expression & Regulation[edit | edit source]

Insert paragraph

⊟Operon[edit | edit source]

Insert paragraph

⊟Regulation[edit | edit source]

  • regulator:

Insert paragraph

⊟Expression data[edit | edit source]

Insert paragraph

⊞Biological Material[edit | edit source]

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

⊞Other Information[edit | edit source]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

Insert paragraph

⊟Relevant publications[edit | edit source]

Insert paragraph