From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae TIGR4
  • locus tag: SP_1268 [new locus tag: SP_RS06215 ]
  • pan locus tag?: PNEUPAN002554000
  • symbol: licB
  • pan gene symbol?: licB
  • synonym:
  • product: licB protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SP_1268 [new locus tag: SP_RS06215 ]
  • symbol: licB
  • product: licB protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1200929..1201807
  • length: 879
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGAAAAGTAAAAACGGAGTTCCTTTTGGCCTTCTCTCAGGTATTTTCTGGGGCTTGGGT
    CTAACGGTTAGTGCTTATATCTTTTCGATTTTTACAGATTTGTCACCCTTTGTGGTGGCT
    GCAACTCATGATTTTTTGAGCATCTTTATCTTACTAGCTTTTCTCTTGGTAAAAGAAGGG
    AAAGTTCGCCTCTCAATTTTCTTAAATATTCGCAATGTCAGTGTTATCATCGGAGCCTTG
    CTAGCAGGCCCTATCGGTATGCAGGCCAATCTTTATGCAGTTAAGTATATCGGAAGTTCT
    TTAGCTTCATCTGTATCGGCTATTTACCCTGCGATTTCAGTTCTATTGGCTTTCTTCTTT
    TTGAAGCACAAGATTTCGAAAAATACTGTATTTGGGATTGTCTTGATTATTGGAGGGATT
    ATTGCTCAGACCTATAAGGTTGAACAGGTTAATTCTTTCTACATTGGGATTCTTTGTGCT
    TTGGTTTGTGCTATTGCATGGGGAAGTGAGAGTGTTCTTAGCTCTTTTGCCATGGAAAGT
    GAATTGAGTGAAATCGAAGCCCTCTTAATCCGTCAAGTAACTTCGTTCTTGTCCTATCTT
    GTGATTGTGCTCTTCTCTCATCAGTCATTTACTGCAGTAGCCAATGGACAATTGCTAGGT
    CTCATGATTGTTTTTGCAGCCTTTGATATGATTTCCTACTTGGCTTATTATATCGCTATC
    AATCGCTTGCAACCAGCCAAGGCTACAGGCTTGAACGTGAGCTATGTAGTATGGACGGTC
    TTGTTTGCAGTTGTTTTCTTGGGTGCACCGCTAGATATGCTGACCATTATGACGTCACTT
    GTCGTCATTGCTGGAGTTTATATTATTATTAAAGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    879

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SP_1268 [new locus tag: SP_RS06215 ]
  • symbol: LicB
  • description: licB protein
  • length: 292
  • theoretical pI: 8.91945
  • theoretical MW: 31629.6
  • GRAVY: 1.13699

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    Metabolism Transport and binding proteins Amino acids, peptides and amines carboxylate/amino acid/amine transporter (TIGR00950; HMM-score: 34.9)
    and 2 more
    Hypothetical proteins Conserved Tpt phosphate/phosphoenolpyruvate translocator (TIGR00817; HMM-score: 22.8)
    phosphonate utilization associated putative membrane protein (TIGR03340; HMM-score: 10.2)
  • TheSEED  :
    • Choline permease LicB
    Cell Wall and Capsule Capsular and extracellular polysacchrides Phosphorylcholine incorporation in LPS  Choline permease LicB
  • ⊞PFAM:
    DMT (CL0184) EamA; EamA-like transporter family (PF00892; HMM-score: 92.4)
    and 1 more
    TPT; Triose-phosphate Transporter family (PF03151; HMM-score: 29.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 10
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.030955
    • TAT(Tat/SPI): 0.004126
    • LIPO(Sec/SPII): 0.018974
  • predicted transmembrane helices (TMHMM): 10

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKSKNGVPFGLLSGIFWGLGLTVSAYIFSIFTDLSPFVVAATHDFLSIFILLAFLLVKEGKVRLSIFLNIRNVSVIIGALLAGPIGMQANLYAVKYIGSSLASSVSAIYPAISVLLAFFFLKHKISKNTVFGIVLIIGGIIAQTYKVEQVNSFYIGILCALVCAIAWGSESVLSSFAMESELSEIEALLIRQVTSFLSYLVIVLFSHQSFTAVANGQLLGLMIVFAAFDMISYLAYYIAINRLQPAKATGLNVSYVVWTVLFAVVFLGAPLDMLTIMTSLVVIAGVYIIIKE

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SP_1268&oldid=3488"