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From PneumoWiki
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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 25-NOV-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae R6
  • locus tag: SPR_RS07975 [old locus tag: spr1607 ]
  • pan locus tag?: PNEUPAN003242000
  • symbol: SPR_RS07975
  • pan gene symbol?: rsmE
  • synonym:
  • product: 16S rRNA (uracil(1498)-N(3))-methyltransferase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPR_RS07975 [old locus tag: spr1607 ]
  • symbol: SPR_RS07975
  • product: 16S rRNA (uracil(1498)-N(3))-methyltransferase
  • replicon: chromosome
  • strand: -
  • coordinates: 1583235..1583978
  • length: 744
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGCAGCAGTATTTTGTAAAAGGCAGTGCTATCTCTCCTGTCACTATCGAGGACAAGGAA
    ACCAGTAAGCATATGTTTCAGGTTATGCGCTTGAAAGAAGAGGATGAGGTTACCTTAGTC
    TTTGATGATGGCATCAAGCGCTTGGCGCGCGTGCTGGATATGGAAAATCGTCAGTTTGAG
    TTGGTCCAAGAATTAAATGACAATGTGGAACTACCAGTTCAAGTGACCATCGCATCTGGA
    TTTCCCAAGGGAGACAAGCTGGAGTTCATCGCTCAAAAAGTAACCGAACTGGGTGCTAGC
    CAAATCTGGGCCTTTCCTGCAGACTGGTCAGTTGCCAAGTGGGATGGCAAGAAATTGGGT
    AAAAAAGTTGAAAAACTAGAAAAAATTGCCCTTGGAGCAGCCGAGCAAAGCAAGCGTAAT
    ATTGTACCAAGTATTAAACTTTTCGAGAAAAAAGCAGATTTTCTAGCTCAGCTGGACCAG
    TTTGACTCTATCATAGTAGCCTATGAAGAATCAGCTAAAGAAGGAGAAGCCGCTGCGCTT
    CTGCAAGCAGTCACTGGTCTTGAAACAGGAGCCAAACTGCTCTTTATCTTTGGTCCAGAA
    GGCGGTCTCTCACCTGCAGAAATCGAAAGTTTTGAAGCTAAAGGAGCCGTTTTGGCAGGC
    CTAGGTCCTCGTATTTTGCGAGCAGAAACAGCACCGCTTTACGCTTTATCAGCCCTTAGT
    GTTTTAGTAGAATTAGAGAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    744

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPR_RS07975 [old locus tag: spr1607 ]
  • symbol: SPR_RS07975
  • description: 16S rRNA (uracil(1498)-N(3))-methyltransferase
  • length: 247
  • theoretical pI: 4.63731
  • theoretical MW: 27155.1
  • GRAVY: -0.057085

⊟Function[edit | edit source]

  • ⊞⊞reaction:
    EC 2.1.1.193?  ExPASy
    16S rRNA (uracil1498-N3)-methyltransferase S-adenosyl-L-methionine + uracil1498 in 16S rRNA = S-adenosyl-L-homocysteine + N3-methyluracil1498 in 16S rRNA
  • ⊞⊞TIGRFAM:
    Genetic information processing Protein synthesis tRNA and rRNA base modification RNA methyltransferase, RsmE family (TIGR00046; EC 2.1.1.-; HMM-score: 172.1)
    and 1 more
    heme utilization protein HutZ (TIGR04110; HMM-score: 14.4)
  • TheSEED: see spr1607
  • ⊞⊞PFAM:
    SPOUT (CL0098) Methyltrans_RNA; RNA methyltransferase domain (PF04452; HMM-score: 180.2)
    and 3 more
    PUA (CL0178) PUA_4; RNA methyltransferase PUA domain (PF20260; HMM-score: 40.2)
    PK_TIM (CL0151) PEP_mutase; Phosphoenolpyruvate phosphomutase (PF13714; HMM-score: 13.3)
    Toprim-like (CL0413) Toprim_4; Toprim domain (PF13662; HMM-score: 13)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞⊞PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 1.78
    • Cytoplasmic Membrane Score: 8.16
    • Cellwall Score: 0.06
    • Extracellular Score: 0.01
    • Internal Helices: 0
  • ⊞⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001255
    • TAT(Tat/SPI): 0.000137
    • LIPO(Sec/SPII): 0.000187
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MQQYFVKGSAISPVTIEDKETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQFELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAVTGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVLAGLGPRILRAETAPLYALSALSVLVELEK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPR_RS07975&oldid=128151"
Insert paragraph

NCBI: 25-NOV-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae R6
  • locus tag: SPR_RS07975 [old locus tag: spr1607 ]
  • pan locus tag?: PNEUPAN003242000
  • symbol: SPR_RS07975
  • pan gene symbol?: rsmE
  • synonym:
  • product: 16S rRNA (uracil(1498)-N(3))-methyltransferase

Insert paragraph

⊟Genome View[edit | edit source]

Insert paragraph

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPR_RS07975 [old locus tag: spr1607 ]
  • symbol: SPR_RS07975
  • product: 16S rRNA (uracil(1498)-N(3))-methyltransferase
  • replicon: chromosome
  • strand: -
  • coordinates: 1583235..1583978
  • length: 744
  • essential: unknown

Insert paragraph

⊟Accession numbers[edit | edit source]

Insert paragraph

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGCAGCAGTATTTTGTAAAAGGCAGTGCTATCTCTCCTGTCACTATCGAGGACAAGGAA
    ACCAGTAAGCATATGTTTCAGGTTATGCGCTTGAAAGAAGAGGATGAGGTTACCTTAGTC
    TTTGATGATGGCATCAAGCGCTTGGCGCGCGTGCTGGATATGGAAAATCGTCAGTTTGAG
    TTGGTCCAAGAATTAAATGACAATGTGGAACTACCAGTTCAAGTGACCATCGCATCTGGA
    TTTCCCAAGGGAGACAAGCTGGAGTTCATCGCTCAAAAAGTAACCGAACTGGGTGCTAGC
    CAAATCTGGGCCTTTCCTGCAGACTGGTCAGTTGCCAAGTGGGATGGCAAGAAATTGGGT
    AAAAAAGTTGAAAAACTAGAAAAAATTGCCCTTGGAGCAGCCGAGCAAAGCAAGCGTAAT
    ATTGTACCAAGTATTAAACTTTTCGAGAAAAAAGCAGATTTTCTAGCTCAGCTGGACCAG
    TTTGACTCTATCATAGTAGCCTATGAAGAATCAGCTAAAGAAGGAGAAGCCGCTGCGCTT
    CTGCAAGCAGTCACTGGTCTTGAAACAGGAGCCAAACTGCTCTTTATCTTTGGTCCAGAA
    GGCGGTCTCTCACCTGCAGAAATCGAAAGTTTTGAAGCTAAAGGAGCCGTTTTGGCAGGC
    CTAGGTCCTCGTATTTTGCGAGCAGAAACAGCACCGCTTTACGCTTTATCAGCCCTTAGT
    GTTTTAGTAGAATTAGAGAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    744

Insert paragraph

This data comes from external databases and cannot be edited.

Insert paragraph

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPR_RS07975 [old locus tag: spr1607 ]
  • symbol: SPR_RS07975
  • description: 16S rRNA (uracil(1498)-N(3))-methyltransferase
  • length: 247
  • theoretical pI: 4.63731
  • theoretical MW: 27155.1
  • GRAVY: -0.057085

Insert paragraph

⊟Function[edit | edit source]

  • ⊞reaction:
    EC 2.1.1.193?  ExPASy
    16S rRNA (uracil1498-N3)-methyltransferase S-adenosyl-L-methionine + uracil1498 in 16S rRNA = S-adenosyl-L-homocysteine + N3-methyluracil1498 in 16S rRNA
  • ⊞TIGRFAM:
    Genetic information processing Protein synthesis tRNA and rRNA base modification RNA methyltransferase, RsmE family (TIGR00046; EC 2.1.1.-; HMM-score: 172.1)
    and 1 more
    heme utilization protein HutZ (TIGR04110; HMM-score: 14.4)
  • TheSEED: see spr1607
  • ⊞PFAM:
    SPOUT (CL0098) Methyltrans_RNA; RNA methyltransferase domain (PF04452; HMM-score: 180.2)
    and 3 more
    PUA (CL0178) PUA_4; RNA methyltransferase PUA domain (PF20260; HMM-score: 40.2)
    PK_TIM (CL0151) PEP_mutase; Phosphoenolpyruvate phosphomutase (PF13714; HMM-score: 13.3)
    Toprim-like (CL0413) Toprim_4; Toprim domain (PF13662; HMM-score: 13)

Insert paragraph

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Insert paragraph

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 1.78
    • Cytoplasmic Membrane Score: 8.16
    • Cellwall Score: 0.06
    • Extracellular Score: 0.01
    • Internal Helices: 0
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001255
    • TAT(Tat/SPI): 0.000137
    • LIPO(Sec/SPII): 0.000187
  • predicted transmembrane helices (TMHMM): 0

Insert paragraph

⊟Accession numbers[edit | edit source]

Insert paragraph

⊟Protein sequence[edit | edit source]

  • MQQYFVKGSAISPVTIEDKETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQFELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAVTGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVLAGLGPRILRAETAPLYALSALSVLVELEK

Insert paragraph

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

Insert paragraph

⊟Expression & Regulation[edit | edit source]

Insert paragraph

⊟Operon[edit | edit source]

Insert paragraph

⊟Regulation[edit | edit source]

  • regulator:

Insert paragraph

⊟Expression data[edit | edit source]

Insert paragraph

⊞Biological Material[edit | edit source]

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

⊞Other Information[edit | edit source]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

Insert paragraph

⊟Relevant publications[edit | edit source]

Insert paragraph