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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 28-AUG-2013

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⊟Summary[edit | edit source]

Contents

  • 1 Summary
  • 2 Genome View
  • 3 Gene
    • 3.1 General
    • 3.2 Accession numbers
    • 3.3 Phenotype
    • 3.4 DNA sequence
  • 4 Protein
    • 4.1 General
    • 4.2 Function
    • 4.3 Structure, modifications & cofactors
    • 4.4 Localization
    • 4.5 Accession numbers
    • 4.6 Protein sequence
    • 4.7 Experimental data
  • 5 Expression & Regulation
    • 5.1 Operon
    • 5.2 Regulation
    • 5.3 Expression data
  • 6 Biological Material
    • 6.1 Mutants
    • 6.2 Expression vector
    • 6.3 lacZ fusion
    • 6.4 GFP fusion
    • 6.5 two-hybrid system
    • 6.6 FLAG-tag construct
    • 6.7 Antibody
  • 7 Other Information
  • 8 Literature
    • 8.1 References
    • 8.2 Relevant publications
  • organism: Streptococcus pneumoniae TCH8431/19A
  • locus tag: HMPREF0837_11233 [new locus tag: HMPREF0837_RS05915 ]
  • pan locus tag?: PNEUPAN002554000
  • symbol: HMPREF0837_11233
  • pan gene symbol?: licB
  • synonym:
  • product: putative membrane protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: HMPREF0837_11233 [new locus tag: HMPREF0837_RS05915 ]
  • symbol: HMPREF0837_11233
  • product: putative membrane protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1131348..1132238
  • length: 891
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: CP001993 (1131348..1132238) NCBI
  • BioCyc: see HMPREF0837_RS05915
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_1124 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGGAGGTTCAGATGAAAAGTAAAAACGGAGTTCCTTTTGGCCTTCTCTCAGGTATTTTC
    TGGGGCTTGGGTCTAACGGTTAGTGCTTATATCTTTTCGATTTTTACAGATTTGTCACCC
    TTTGTGGTGGCTGCAACTCATGATTTTTTGAGCATCTTTATCTTACTAGCTTTTCTCTTG
    GTAAAAGAAGGGAAAGTTCGCCTCTCAATTTTCTTAAATATTCGCAATGTCAGTGTTATC
    ATAGGAGCCTTGCTAGCAGGCCCTATCGGTATGCAGGCCAATCTTTATGCAGTTAAGTAT
    ATCGGAAGTTCTTTAGCTTCATCTGTATCGGCTATTTACCCTGCGATTTCAGTTCTATTG
    GCTTTCTTCTTTTTGAAGCACAAGATTTCGAAAAATACTGTATTTGGGATTGTCTTGATT
    ATTGGAGGGATTATTGCCCAGACCTATAAGGTTGAACAGGTTAATTCTTTCTACATTGGG
    ATTCTTTGTGCTTTGGTTTGTGCTATTGCATGGGGAAGTGAGAGTGTTCTTAGCTCTTTT
    GCCATGGAAAGTGAATTGAGTGAAATCGAAGCCCTCTTAATCCGTCAAGTAACTTCGTTC
    TTGTCCTATCTTGTGATTGTGCTCTTCTCTCATCAGTCATTTGTTGCAGTAGCCAATGGA
    CAATTGCTAGGTCTCATGATTGTCTTTGTAGCCTTTGATATGATTTCCTATTTGGCTTAT
    TATATCGCTATCAATCGCTTGCAACCAGCCAAGGCTACAGGCTTGAACGTGAGCTATGTA
    GTATGGACTGTCTTGTTCGCAGCTCTTTTCTTGGGAACATCATTAGATATGCTGACCATT
    ATGACGTCACTTGTCGTCATTGCTGGAGTTTATATTATTATTAAAGAATAA
    60
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    840
    891

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: HMPREF0837_11233 [new locus tag: HMPREF0837_RS05915 ]
  • symbol: HMPREF0837_11233
  • description: putative membrane protein
  • length: 296
  • theoretical pI: 8.58976
  • theoretical MW: 32149.2
  • GRAVY: 1.12804

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    Metabolism Transport and binding proteins Amino acids, peptides and amines carboxylate/amino acid/amine transporter (TIGR00950; HMM-score: 34.6)
    and 1 more
    Hypothetical proteins Conserved Tpt phosphate/phosphoenolpyruvate translocator (TIGR00817; HMM-score: 21.4)
  • TheSEED  :
    • Choline permease LicB
    Cell Wall and Capsule Capsular and extracellular polysacchrides Phosphorylcholine incorporation in LPS  Choline permease LicB
  • ⊞PFAM:
    DMT (CL0184) EamA; EamA-like transporter family (PF00892; HMM-score: 91.5)
    and 1 more
    TPT; Triose-phosphate Transporter family (PF03151; HMM-score: 30.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 10
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.014758
    • TAT(Tat/SPI): 0.001819
    • LIPO(Sec/SPII): 0.009135
  • predicted transmembrane helices (TMHMM): 10

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ADI69461 NCBI
  • UniProt: D6ZS72 UniProt

⊟Protein sequence[edit | edit source]

  • MEVQMKSKNGVPFGLLSGIFWGLGLTVSAYIFSIFTDLSPFVVAATHDFLSIFILLAFLLVKEGKVRLSIFLNIRNVSVIIGALLAGPIGMQANLYAVKYIGSSLASSVSAIYPAISVLLAFFFLKHKISKNTVFGIVLIIGGIIAQTYKVEQVNSFYIGILCALVCAIAWGSESVLSSFAMESELSEIEALLIRQVTSFLSYLVIVLFSHQSFVAVANGQLLGLMIVFVAFDMISYLAYYIAINRLQPAKATGLNVSYVVWTVLFAALFLGTSLDMLTIMTSLVVIAGVYIIIKE

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V: SPV_1124 PneumoExpress

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=HMPREF0837_11233&oldid=170451"
  • This page was last edited on 20 January 2022, at 19:41.
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