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From PneumoWiki
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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 10-MAR-2021

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⊟Summary[edit | edit source]

Contents

  • 1 Summary
  • 2 Genome View
  • 3 Gene
    • 3.1 General
    • 3.2 Accession numbers
    • 3.3 Phenotype
    • 3.4 DNA sequence
  • 4 Protein
    • 4.1 General
    • 4.2 Function
    • 4.3 Structure, modifications & cofactors
    • 4.4 Localization
    • 4.5 Accession numbers
    • 4.6 Protein sequence
    • 4.7 Experimental data
  • 5 Expression & Regulation
    • 5.1 Operon
    • 5.2 Regulation
    • 5.3 Expression data
  • 6 Biological Material
    • 6.1 Mutants
    • 6.2 Expression vector
    • 6.3 lacZ fusion
    • 6.4 GFP fusion
    • 6.5 two-hybrid system
    • 6.6 FLAG-tag construct
    • 6.7 Antibody
  • 7 Other Information
  • 8 Literature
    • 8.1 References
    • 8.2 Relevant publications
  • organism: Streptococcus pneumoniae Hungary19A-6
  • locus tag: SPH_RS10040 [old locus tag: SPH_2055 ]
  • pan locus tag?: PNEUPAN003500000
  • symbol: SPH_RS10040
  • pan gene symbol?: ytpP
  • synonym:
  • product: thioredoxin family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPH_RS10040 [old locus tag: SPH_2055 ]
  • symbol: SPH_RS10040
  • product: thioredoxin family protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1895466..1895783
  • length: 318
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_010380 (1895466..1895783) NCBI
  • BioCyc: SPH_RS10040 BioCyc
  • MicrobesOnline: see SPH_2055
  • PneumoBrowse for strain D39V: SPV_1714 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    ATGATACAGCCAGCAAGTTTAGAAGAATTAGCATCTTTAGTGGAAAAAGCGGGCAAGAAG
    GTCTTCCTTTTTGTGGCAGACTGGTGTGGCGATTGTCGTTATATTTATCCTGCCTTACCA
    GAGATTGAGGAGACCAATCCAGAGTTCACCTTTATTCGAATGGACCGAGATCAGTATATG
    GATTTGGCCAAACTCTGGGATGTTTACGGAATTCCTAGCCTTGTTGTTCTAGAAAAGGAC
    AAGGAAATCGGTCGTTTTGTCAATCGCGACCGTAAAAGTAAGGAGCAAATTAACGATTTT
    TTAGCAGGATTGAAATAG
    60
    120
    180
    240
    300
    318

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPH_RS10040 [old locus tag: SPH_2055 ]
  • symbol: SPH_RS10040
  • description: thioredoxin family protein
  • length: 105
  • theoretical pI: 4.59863
  • theoretical MW: 12220
  • GRAVY: -0.270476

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    Metabolism Energy metabolism Electron transport thioredoxin (TIGR01068; HMM-score: 52.6)
    and 5 more
    Genetic information processing Protein fate Protein folding and stabilization protein disulfide-isomerase domain (TIGR01126; HMM-score: 32.2)
    protein disulfide isomerase (TIGR01130; HMM-score: 24.9)
    glutaredoxin-like protein, YruB-family (TIGR02196; HMM-score: 13.3)
    Genetic information processing Protein fate Protein folding and stabilization periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily (TIGR00385; HMM-score: 13.2)
    glutaredoxin-like protein (TIGR02200; HMM-score: 12.9)
  • TheSEED: see SPH_2055
  • ⊞PFAM:
    Thioredoxin (CL0172) Thioredoxin; Thioredoxin (PF00085; HMM-score: 54)
    and 4 more
    Thioredoxin_9; Thioredoxin (PF14595; HMM-score: 38.1)
    Thioredoxin_8; Thioredoxin-like (PF13905; HMM-score: 23)
    Thioredoxin_2; Thioredoxin-like domain (PF13098; HMM-score: 19.5)
    Thioredoxin_7; Thioredoxin-like (PF13899; HMM-score: 13.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.029506
    • TAT(Tat/SPI): 0.000522
    • LIPO(Sec/SPII): 0.011747
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000615767 NCBI
  • UniProt: see SPH_2055

⊟Protein sequence[edit | edit source]

  • MIQPASLEELASLVEKAGKKVFLFVADWCGDCRYIYPALPEIEETNPEFTFIRMDRDQYMDLAKLWDVYGIPSLVVLEKDKEIGRFVNRDRKSKEQINDFLAGLK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

  • MicrobesOnline: SPH_RS10030 < SPH_RS10035 < SPH_RS10040 < SPH_RS10045

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V: SPV_1714 PneumoExpress

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPH_RS10040&oldid=10588"
  • This page was last edited on 20 January 2022, at 13:28.
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