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From PneumoWiki
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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 30-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae R6
  • locus tag: spr1239 [new locus tag: SPR_RS06195 ]
  • pan locus tag?: PNEUPAN002658000
  • symbol: amy
  • pan gene symbol?: amy
  • synonym:
  • product: Alpha-amylase precursor

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: spr1239 [new locus tag: SPR_RS06195 ]
  • symbol: amy
  • product: Alpha-amylase precursor
  • replicon: chromosome
  • strand: +
  • coordinates: 1237343..1238797
  • length: 1455
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    ATGCAAAATCAAACACTCATGCAATACTTTGAATGGTATCTGCCCCACGACGGTCAACAC
    TGGACGCGTCTGGCTGAAAATGCTCCACACCTAGCTCATCTGGGGATCAGTCACGTCTGG
    ATGCCACCAGCCTTCAAGGCAACCAACGAAAAAGATGTCGGCTATGGGGTCTATGACTTA
    TTTGACTTAGGAGAGTTCAACCAAAAAGGGACTGTCCGCACCAAGTATGGTTTCAAAGAA
    GACTATCTTCAAGCCATTCAAGCCCTTAAAGCACAGGGAATTCAACCTATGGCCGATGTA
    GTTCTCAACCACAAGGCTGCTGCCGATCACAGGGAAGCCTTTCAGGTTATCGAAGTTGAT
    CCTGTAGACCGTACAGTTGAACTTGGAGAACCCTTCACCATCAATGGCTGGACTAGTTTT
    ACCTTCGATGGTCGCCAAGATACCTATAATGGCTTCCACTGGCATTGGTACCACTTCACC
    GGTACAGACTACGATGCCAAACGCAGTAAATCTGGGATTTATCTGATCCAAGGGGACAAC
    AAGGGCTGGGCTAACGAGGAATTGGTCGATAACGAAAACGGAAACTACGACTACCTCATG
    TATGCCGACCTAGACTTTAAACATCCTGAAGTCATCCAAAACATCTATGACTGGGCTGAT
    TGGTTCATGGAAACGACTGGTGTAGCTGGTTTCCGTTTGGATGCCGTTAAGCATATTGAC
    TCTTTCTTTATGCGCAACTTCATCCGCGATATGAAGGAAAAATACGGTGACGATTTCTAT
    GTTTTTGGTGAATTTTGGAACTCAGACAAGGAAGCCAATCTGGACTATCTCGAAAAAACG
    GAAGAACACTTTGACCTTGTCGATGTTCGTCTCCACCAGAATCTCTTTGAAGCCAGTCAA
    GCTGGCGCAAACTATGACCTTCGTGGCATTTTCACAGATAGCCTGGTTGAACTCAAGCCT
    GACAAGGCTGTGACTTTTGTCGACAACCACGATACCCAACGAGGACAAGCCCTTGAGTCT
    ACCGTTGAAGAATGGTTCAAGCCAGCAGCCTATGCCCTCATTTTGTTACGCCAAGACGGC
    CTTCCATGTGTCTTTTACGGAGACTACTATGGGATTTCAGGGCAGTATGCTCAACAAGAT
    TTCAAAGAAATCCTTGACCGCCTCCTAGCCATCCGAAAAGACTTGGCCTATGGAGAACAA
    AATGACTACTTTGACCATGCTAACTGTATCGGTTGGGTACGTTCAGGTGCTGAAAATCAA
    TCCCCAATCGCAGTCCTTATCTCAAATGACCAAGAAAACAGCAAGTCAATGTTTGTCGGT
    CAAGAATGGACTAATCAAACCTTTGTAGATTTACTTGGTAGCCACCAAGGTCAAGTTACA
    ATTGATGAGGAAGGTTATGGACAATTCCCTGTCTCAGCTAGATCCGTAAGTGTCTGGGCA
    GTCAATACCATCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1455

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: spr1239 [new locus tag: SPR_RS06195 ]
  • symbol: Amy
  • description: Alpha-amylase precursor
  • length: 484
  • theoretical pI: 4.43607
  • theoretical MW: 55879.4
  • GRAVY: -0.522521

⊟Function[edit | edit source]

  • ⊞⊞reaction:
    EC 3.2.1.1?  ExPASy
    Alpha-amylase Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units
  • ⊞⊞TIGRFAM:
    alpha,alpha-phosphotrehalase (TIGR02403; EC 3.2.1.93; HMM-score: 45.8)
    and 4 more
    Metabolism Energy metabolism Biosynthesis and degradation of polysaccharides malto-oligosyltrehalose synthase (TIGR02401; EC 5.4.99.15; HMM-score: 28.6)
    Metabolism Energy metabolism Biosynthesis and degradation of polysaccharides malto-oligosyltrehalose trehalohydrolase (TIGR02402; EC 3.2.1.141; HMM-score: 27)
    Metabolism Energy metabolism Biosynthesis and degradation of polysaccharides glycogen debranching enzyme GlgX (TIGR02100; EC 3.2.1.-; HMM-score: 19.7)
    Metabolism Energy metabolism Biosynthesis and degradation of polysaccharides alpha-1,6-glucosidases, pullulanase-type (TIGR02103; EC 3.2.1.41; HMM-score: 11.6)
  • ⊞⊞TheSEED  :
    • Cytoplasmic alpha-amylase (EC 3.2.1.1)
    Carbohydrates Di- and oligosaccharides Maltose and Maltodextrin Utilization  Cytoplasmic alpha-amylase (EC 3.2.1.1)
    and 1 more
    Carbohydrates Polysaccharides Glycogen metabolism  Cytoplasmic alpha-amylase (EC 3.2.1.1)
  • ⊞⊞PFAM:
    Glyco_hydro_tim (CL0058) Alpha-amylase; Alpha amylase, catalytic domain (PF00128; HMM-score: 115.3)
    and 2 more
    GHD (CL0369) Alpha-amy_C_pro; Alpha-amylase C-terminal (PF09154; HMM-score: 47.8)
    Glyco_hydro_tim (CL0058) Glyco_hydro_70; Glycosyl hydrolase family 70 (PF02324; HMM-score: 40.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞⊞PSORTb: Extracellular
    • Cytoplasmic Score: 0.1
    • Cytoplasmic Membrane Score: 0.14
    • Cellwall Score: 0.15
    • Extracellular Score: 9.6
    • Internal Helices: 0
  • ⊞⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.943
    • Cytoplasmic Membrane Score: 0.0001
    • Cell wall & surface Score: 0.0003
    • Extracellular Score: 0.0567
  • ⊞⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.016868
    • TAT(Tat/SPI): 0.000757
    • LIPO(Sec/SPII): 0.001168
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MQNQTLMQYFEWYLPHDGQHWTRLAENAPHLAHLGISHVWMPPAFKATNEKDVGYGVYDLFDLGEFNQKGTVRTKYGFKEDYLQAIQALKAQGIQPMADVVLNHKAAADHREAFQVIEVDPVDRTVELGEPFTINGWTSFTFDGRQDTYNGFHWHWYHFTGTDYDAKRSKSGIYLIQGDNKGWANEELVDNENGNYDYLMYADLDFKHPEVIQNIYDWADWFMETTGVAGFRLDAVKHIDSFFMRNFIRDMKEKYGDDFYVFGEFWNSDKEANLDYLEKTEEHFDLVDVRLHQNLFEASQAGANYDLRGIFTDSLVELKPDKAVTFVDNHDTQRGQALESTVEEWFKPAAYALILLRQDGLPCVFYGDYYGISGQYAQQDFKEILDRLLAIRKDLAYGEQNDYFDHANCIGWVRSGAENQSPIAVLISNDQENSKSMFVGQEWTNQTFVDLLGSHQGQVTIDEEGYGQFPVSARSVSVWAVNTI

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • ⊞⊞regulator: MalR (repression) regulon

⊟Expression data[edit | edit source]

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=spr1239&oldid=129899"
Insert paragraph

NCBI: 30-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae R6
  • locus tag: spr1239 [new locus tag: SPR_RS06195 ]
  • pan locus tag?: PNEUPAN002658000
  • symbol: amy
  • pan gene symbol?: amy
  • synonym:
  • product: Alpha-amylase precursor

Insert paragraph

⊟Genome View[edit | edit source]

Insert paragraph

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: spr1239 [new locus tag: SPR_RS06195 ]
  • symbol: amy
  • product: Alpha-amylase precursor
  • replicon: chromosome
  • strand: +
  • coordinates: 1237343..1238797
  • length: 1455
  • essential: unknown

Insert paragraph

⊟Accession numbers[edit | edit source]

Insert paragraph

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    ATGCAAAATCAAACACTCATGCAATACTTTGAATGGTATCTGCCCCACGACGGTCAACAC
    TGGACGCGTCTGGCTGAAAATGCTCCACACCTAGCTCATCTGGGGATCAGTCACGTCTGG
    ATGCCACCAGCCTTCAAGGCAACCAACGAAAAAGATGTCGGCTATGGGGTCTATGACTTA
    TTTGACTTAGGAGAGTTCAACCAAAAAGGGACTGTCCGCACCAAGTATGGTTTCAAAGAA
    GACTATCTTCAAGCCATTCAAGCCCTTAAAGCACAGGGAATTCAACCTATGGCCGATGTA
    GTTCTCAACCACAAGGCTGCTGCCGATCACAGGGAAGCCTTTCAGGTTATCGAAGTTGAT
    CCTGTAGACCGTACAGTTGAACTTGGAGAACCCTTCACCATCAATGGCTGGACTAGTTTT
    ACCTTCGATGGTCGCCAAGATACCTATAATGGCTTCCACTGGCATTGGTACCACTTCACC
    GGTACAGACTACGATGCCAAACGCAGTAAATCTGGGATTTATCTGATCCAAGGGGACAAC
    AAGGGCTGGGCTAACGAGGAATTGGTCGATAACGAAAACGGAAACTACGACTACCTCATG
    TATGCCGACCTAGACTTTAAACATCCTGAAGTCATCCAAAACATCTATGACTGGGCTGAT
    TGGTTCATGGAAACGACTGGTGTAGCTGGTTTCCGTTTGGATGCCGTTAAGCATATTGAC
    TCTTTCTTTATGCGCAACTTCATCCGCGATATGAAGGAAAAATACGGTGACGATTTCTAT
    GTTTTTGGTGAATTTTGGAACTCAGACAAGGAAGCCAATCTGGACTATCTCGAAAAAACG
    GAAGAACACTTTGACCTTGTCGATGTTCGTCTCCACCAGAATCTCTTTGAAGCCAGTCAA
    GCTGGCGCAAACTATGACCTTCGTGGCATTTTCACAGATAGCCTGGTTGAACTCAAGCCT
    GACAAGGCTGTGACTTTTGTCGACAACCACGATACCCAACGAGGACAAGCCCTTGAGTCT
    ACCGTTGAAGAATGGTTCAAGCCAGCAGCCTATGCCCTCATTTTGTTACGCCAAGACGGC
    CTTCCATGTGTCTTTTACGGAGACTACTATGGGATTTCAGGGCAGTATGCTCAACAAGAT
    TTCAAAGAAATCCTTGACCGCCTCCTAGCCATCCGAAAAGACTTGGCCTATGGAGAACAA
    AATGACTACTTTGACCATGCTAACTGTATCGGTTGGGTACGTTCAGGTGCTGAAAATCAA
    TCCCCAATCGCAGTCCTTATCTCAAATGACCAAGAAAACAGCAAGTCAATGTTTGTCGGT
    CAAGAATGGACTAATCAAACCTTTGTAGATTTACTTGGTAGCCACCAAGGTCAAGTTACA
    ATTGATGAGGAAGGTTATGGACAATTCCCTGTCTCAGCTAGATCCGTAAGTGTCTGGGCA
    GTCAATACCATCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1455

Insert paragraph

This data comes from external databases and cannot be edited.

Insert paragraph

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: spr1239 [new locus tag: SPR_RS06195 ]
  • symbol: Amy
  • description: Alpha-amylase precursor
  • length: 484
  • theoretical pI: 4.43607
  • theoretical MW: 55879.4
  • GRAVY: -0.522521

Insert paragraph

⊟Function[edit | edit source]

  • ⊞reaction:
    EC 3.2.1.1?  ExPASy
    Alpha-amylase Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units
  • ⊞TIGRFAM:
    alpha,alpha-phosphotrehalase (TIGR02403; EC 3.2.1.93; HMM-score: 45.8)
    and 4 more
    Metabolism Energy metabolism Biosynthesis and degradation of polysaccharides malto-oligosyltrehalose synthase (TIGR02401; EC 5.4.99.15; HMM-score: 28.6)
    Metabolism Energy metabolism Biosynthesis and degradation of polysaccharides malto-oligosyltrehalose trehalohydrolase (TIGR02402; EC 3.2.1.141; HMM-score: 27)
    Metabolism Energy metabolism Biosynthesis and degradation of polysaccharides glycogen debranching enzyme GlgX (TIGR02100; EC 3.2.1.-; HMM-score: 19.7)
    Metabolism Energy metabolism Biosynthesis and degradation of polysaccharides alpha-1,6-glucosidases, pullulanase-type (TIGR02103; EC 3.2.1.41; HMM-score: 11.6)
  • ⊞TheSEED  :
    • Cytoplasmic alpha-amylase (EC 3.2.1.1)
    Carbohydrates Di- and oligosaccharides Maltose and Maltodextrin Utilization  Cytoplasmic alpha-amylase (EC 3.2.1.1)
    and 1 more
    Carbohydrates Polysaccharides Glycogen metabolism  Cytoplasmic alpha-amylase (EC 3.2.1.1)
  • ⊞PFAM:
    Glyco_hydro_tim (CL0058) Alpha-amylase; Alpha amylase, catalytic domain (PF00128; HMM-score: 115.3)
    and 2 more
    GHD (CL0369) Alpha-amy_C_pro; Alpha-amylase C-terminal (PF09154; HMM-score: 47.8)
    Glyco_hydro_tim (CL0058) Glyco_hydro_70; Glycosyl hydrolase family 70 (PF02324; HMM-score: 40.9)

Insert paragraph

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Insert paragraph

⊟Localization[edit | edit source]

  • ⊞PSORTb: Extracellular
    • Cytoplasmic Score: 0.1
    • Cytoplasmic Membrane Score: 0.14
    • Cellwall Score: 0.15
    • Extracellular Score: 9.6
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.943
    • Cytoplasmic Membrane Score: 0.0001
    • Cell wall & surface Score: 0.0003
    • Extracellular Score: 0.0567
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.016868
    • TAT(Tat/SPI): 0.000757
    • LIPO(Sec/SPII): 0.001168
  • predicted transmembrane helices (TMHMM): 0

Insert paragraph

⊟Accession numbers[edit | edit source]

Insert paragraph

⊟Protein sequence[edit | edit source]

  • MQNQTLMQYFEWYLPHDGQHWTRLAENAPHLAHLGISHVWMPPAFKATNEKDVGYGVYDLFDLGEFNQKGTVRTKYGFKEDYLQAIQALKAQGIQPMADVVLNHKAAADHREAFQVIEVDPVDRTVELGEPFTINGWTSFTFDGRQDTYNGFHWHWYHFTGTDYDAKRSKSGIYLIQGDNKGWANEELVDNENGNYDYLMYADLDFKHPEVIQNIYDWADWFMETTGVAGFRLDAVKHIDSFFMRNFIRDMKEKYGDDFYVFGEFWNSDKEANLDYLEKTEEHFDLVDVRLHQNLFEASQAGANYDLRGIFTDSLVELKPDKAVTFVDNHDTQRGQALESTVEEWFKPAAYALILLRQDGLPCVFYGDYYGISGQYAQQDFKEILDRLLAIRKDLAYGEQNDYFDHANCIGWVRSGAENQSPIAVLISNDQENSKSMFVGQEWTNQTFVDLLGSHQGQVTIDEEGYGQFPVSARSVSVWAVNTI

Insert paragraph

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

Insert paragraph

⊟Expression & Regulation[edit | edit source]

Insert paragraph

⊟Operon[edit | edit source]

Insert paragraph

⊟Regulation[edit | edit source]

  • ⊞regulator: MalR (repression) regulon

Insert paragraph

⊟Expression data[edit | edit source]

Insert paragraph

⊞Biological Material[edit | edit source]

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

⊞Other Information[edit | edit source]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

Insert paragraph

⊟Relevant publications[edit | edit source]

Insert paragraph