From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 03-SEP-2019

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae ASP0581
  • locus tag: ASP0581_20920 [new locus tag: EL334_RS11315 ]
  • pan locus tag?: PNEUPAN003834000
  • symbol: fcsK
  • pan gene symbol?: fucK
  • synonym:
  • product: L-fuculose phosphate aldolase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: ASP0581_20920 [new locus tag: EL334_RS11315 ]
  • symbol: fcsK
  • product: L-fuculose phosphate aldolase
  • replicon: chromosome
  • strand: -
  • coordinates: 2078929..2080332
  • length: 1404
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    ATGGAAGCGGTTTTAGCAATAGATTTAGGTGCGACTTCTGGAAGAGCAATCGTTGGTTAC
    CTTTCTGAAAATAAACTAGTAATGGAAGAAATAAATCGCTTTTCTAATCTACCTATTAGA
    GTAAAAGGGCATTTATCTTGGGATATTGACTTTCTACTAGCTAAAATTCTTGAAAGTATC
    CGCTTGGCTAATACTAGTTACAAGATTTTATCTATCGGTATTGACACATGGGGAGTTGAT
    TTTGGACTGATTGATAATGAAGGTAAGCTGTTATTACAACCTGTTCATTATCGTGATGAA
    AGAACAAAGGGAGTGTTAAAGGAAATATCTGAAATGACTGAATTAGAAAAACTGTATTCA
    GAGACAGGAAATCAGATTATGGAGATAAATACCTTGTTTCAACTCTTTAAGGCACGTCAA
    GAATCTCCTGACTCTTTCTATAAGACCAATAAGATTCTTTTAATGCCAGATTTGTTTAAT
    TATCTCTTGACAGGTAAGTTTGCTACAGAAAAAAGCATTGCTTCAACAACTCAATTATTT
    GATCCTAGGAGTCAAAATTGGAATCAGAATATCTTAAAACTATTTGAATTGGATTCAACT
    TTACTTCCTGAAATTGTTTCAGAGGGAAATGTCCTTGGAAGGATAAAAGAGGAGTATGGT
    TTAGGCGATATTCCTGTTGTGAATGTTTGTAGTCATGATACAGCAAGCGCGATTGTCTCA
    GTACCTAAGACAGAAGATAGTTTGTTTATTTCATCAGGGACTTGGTCTTTGGTTGGAGTG
    GAGCTTTCTTCACCTATTCTTAGTACCGAATCCTTCAGTTATGGATTTACAAATGAAGTC
    GGTAAAGATGGAGTGATTACATTTCTGAAGAATTGTACAGGGTTGTGGATCATAGAGGAA
    CTAAGACGTTCATTTGAACGAAGAGGGAAAGCCTATTCTTTTGATGATATTAGGACAATG
    GTGGAGAAAGAAAAAGAAAATCTTCCTCTGATTGATACTGAATCAACTGAATTTGCAACA
    GAATCTGATATGCACAAGACTTTGACAGAATATCTAGCTTATCATCATGAAACTGGAGAG
    TGGACAGATGGACAACTATTTAAGATCGTTTATGAAAGCCTAGCTGAAACGTATAAGGAA
    ACAATAGAGTTACTAGAAGAACTAACTCATAAGGTTTATAAGAGGATATATGTGATTGGA
    GGAGGTGCTAGAGCCAGTTACTTTAACCAAATGATTGCTGATAGAACTGGTAAAGAAGTT
    CTTACAGGTTCAACTGAGGCTACAGCTGTGGGGAATATTTGTATACAGCTATTAAGTCAA
    GGTAAAATAAACGAGGATACAGGGTTAAAGGATATTATGACAAATATTGCTGATACACAA
    TATTATTATCCTCAGCTATCATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1404

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: ASP0581_20920 [new locus tag: EL334_RS11315 ]
  • symbol: FcsK
  • description: L-fuculose phosphate aldolase
  • length: 467
  • theoretical pI: 4.55692
  • theoretical MW: 52728.5
  • GRAVY: -0.206852

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    rhamnulokinase (TIGR02627; EC 2.7.1.5; HMM-score: 413.7)
    and 4 more
    Metabolism Energy metabolism Sugars L-fuculokinase (TIGR02628; EC 2.7.1.51; HMM-score: 162.8)
    Metabolism Energy metabolism Sugars xylulokinase (TIGR01312; EC 2.7.1.17; HMM-score: 119.8)
    Metabolism Energy metabolism Other glycerol kinase (TIGR01311; EC 2.7.1.30; HMM-score: 65.8)
    Metabolism Energy metabolism Sugars gluconate kinase (TIGR01314; EC 2.7.1.12; HMM-score: 58.8)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • ⊞PFAM:
    Actin_ATPase (CL0108) FGGY_N; FGGY family of carbohydrate kinases, N-terminal domain (PF00370; HMM-score: 119.4)
    and 1 more
    FGGY_C; FGGY family of carbohydrate kinases, C-terminal domain (PF02782; HMM-score: 66.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003574
    • TAT(Tat/SPI): 0.000128
    • LIPO(Sec/SPII): 0.000947
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: BBG82614 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MEAVLAIDLGATSGRAIVGYLSENKLVMEEINRFSNLPIRVKGHLSWDIDFLLAKILESIRLANTSYKILSIGIDTWGVDFGLIDNEGKLLLQPVHYRDERTKGVLKEISEMTELEKLYSETGNQIMEINTLFQLFKARQESPDSFYKTNKILLMPDLFNYLLTGKFATEKSIASTTQLFDPRSQNWNQNILKLFELDSTLLPEIVSEGNVLGRIKEEYGLGDIPVVNVCSHDTASAIVSVPKTEDSLFISSGTWSLVGVELSSPILSTESFSYGFTNEVGKDGVITFLKNCTGLWIIEELRRSFERRGKAYSFDDIRTMVEKEKENLPLIDTESTEFATESDMHKTLTEYLAYHHETGEWTDGQLFKIVYESLAETYKETIELLEELTHKVYKRIYVIGGGARASYFNQMIADRTGKEVLTGSTEATAVGNICIQLLSQGKINEDTGLKDIMTNIADTQYYYPQLS

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Expression data[edit | edit source]

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=ASP0581_20920&oldid=48843"