⊟Summary[edit | edit source]

PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

NCBI: 17-JAN-2018

⊟Summary

• organism: Streptococcus pneumoniae AP200
locus tag: SPAP_1537 [new locus tag: SPAP_RS07575 ]
pan locus tag^?: PNEUPAN002839000
symbol: SPAP_1537
pan gene symbol^?: IS1239
• synonym:
• product: Transposase-like protein, IS1239

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SPAP_1537 [new locus tag: SPAP_RS07575 ]
• symbol: SPAP_1537
• product: Transposase-like protein, IS1239
• replicon: chromosome
• strand: -
• coordinates: 1445106..1446116
• length: 1011
• essential: unknown

⊟Accession numbers

• Location: CP002121 (1445106..1446116) NCBI
• BioCyc: see SPAP_RS07575
• MicrobesOnline:
• PneumoBrowse for strain D39V: SPV_1342 PneumoBrowse

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
  181
  241
  301
  361
  421
  481
  541
  601
  661
  721
  781
  841
  901
  961
  
  TTGTGTTATACTTGTTGTTCAACCACAAACACAAGAAAGGCACAGAGATGCAAAACCATT
  ATACTACAAAAGGCGAACAAAGGGAAATCAAATAGAGAAATTGCCTCTCTACTTGGAAAA
  GCTCCTCAAACTATCCACACTGAAATCAAGCGTAGGACAGTCCGACAATGTCTTGGAAAA
  GGGCGCTTCAAAGAGGTTTATTCTGCCGACTATGCTCAACAGTCTTATGAAAACAATCGC
  AAGCGCTCGGTCAAGAAATCAAGCTTGACCAAGGAACTAAAGGAAAAGATTCTCCACTAT
  CATAACCAAAAATTTTCGCCTGAAATGATGGTTATGGCTAAAGGGGTTAACGTGGGAATT
  TCAACCATTTACTATTGGATTCATCATGGAAAATTGGGGTTAAGCAAGCAGGATTTGCTT
  TACCCTAGAAAAGGAAAAGCGCTTAAGAAACAGGCTAGCACCAACTTTAAACCTGCTGGT
  CAATCCATCGAACAGCGGCCTGAAGCTATCAATCTTCGCTTGGAGAATGGGCATTATGAG
  ATTGATACGGTTCTACTTACGAGAGCGAAAAACTACTGCTTGCTTGTCTTGACGGATCGA
  AAGAGTAGACATCAGATCATCCGATTGATTCCAAATAAAAGTGCTGAGGTGGTCAATCAG
  GCTCTAAAACTCATCTTAAAACAACACAAGATTCTTTCCATCACGGCAGATAATGGAACG
  GAATTCAATCGCTTGTTTGATGTATTTGCTGAGGAGCACATCTATTATGCGCACCCCTAT
  GCCTCTTGGGAAAGGGGAACTAATGAGAATCACAACAGGCTCATTCGTAGATGGTTACCT
  AAGGGAACCAAGAAAATGACTCCCAAAGAAGTCGCATTCATCGAAAAGTGGATTAACAAC
  TATCCTAAAAAATGCTTGGACTACAAGTCACCCAGAGAAGACTTCTGGATGGCTAACTTG
  AACTTGAAATTTAGCAAAATGGAAATAATTTTTATTAAACGCTTCCAATAG
  60
  120
  180
  240
  300
  360
  420
  480
  540
  600
  660
  720
  780
  840
  900
  960
  1011
  

⊟Protein

⊟General

• locus tag: SPAP_1537 [new locus tag: SPAP_RS07575 ]
• symbol: SPAP_1537
• description: Transposase-like protein, IS1239
• length: 336
• theoretical pI: 10.5838
• theoretical MW: 39353.5
• GRAVY: -0.686905

⊟Function

• ⊞⊞TIGRFAM:
  RNA polymerase sigma-70 factor, Bacteroides expansion family 1 (TIGR02985; HMM-score: 16.7)
  Unknown function General DNA binding domain, excisionase family (TIGR01764; HMM-score: 13.8)
  and 2 more
  transcriptional regulator EpsA (TIGR03020; HMM-score: 13.3)
  RNA polymerase sigma-70 factor, TIGR02960 family (TIGR02960; HMM-score: 12)
• TheSEED  :
  • Mobile element protein
• ⊞⊞PFAM:
  HTH (CL0123) HTH_38; Helix-turn-helix domain (PF13936; HMM-score: 41.4)
  and 11 more
  RNase_H (CL0219) rve; Integrase core domain (PF00665; HMM-score: 22.4)
  HTH (CL0123) HTH_23; Homeodomain-like domain (PF13384; HMM-score: 19.9)
  Sigma70_r4_2; Sigma-70, region 4 (PF08281; HMM-score: 19)
  HTH_17; Helix-turn-helix domain (PF12728; HMM-score: 18.6)
  GerE; Bacterial regulatory proteins, luxR family (PF00196; HMM-score: 15.9)
  HTH_28; Helix-turn-helix domain (PF13518; HMM-score: 15.2)
  PKinase (CL0016) PK_Tyr_Ser-Thr; Protein tyrosine and serine/threonine kinase (PF07714; HMM-score: 14.2)
  no clan defined Abi_2; Abi-like protein (PF07751; HMM-score: 13.5)
  HTH (CL0123) HTH_24; Winged helix-turn-helix DNA-binding (PF13412; HMM-score: 13.3)
  no clan defined DnaB_2; Replication initiation and membrane attachment (PF07261; HMM-score: 13.2)
  HTH (CL0123) HTH_29; Winged helix-turn helix (PF13551; HMM-score: 13.2)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• ⊞⊞PSORTb: unknown (no significant prediction)
  • Cytoplasmic Score: 2.5
  • Cytoplasmic Membrane Score: 2.5
  • Cellwall Score: 2.5
  • Extracellular Score: 2.5
  • Internal Helices: 0
• ⊞⊞SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.013077
  • TAT(Tat/SPI): 0.001257
  • LIPO(Sec/SPII): 0.006383
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI:
• RefSeq: ADM85123 NCBI
• UniProt:

⊟Protein sequence

• MCYTCCSTTNTRKAQRCKTIILQKANKGKSNREIASLLGKAPQTIHTEIKRRTVRQCLGKGRFKEVYSADYAQQSYENNRKRSVKKSSLTKELKEKILHYHNQKFSPEMMVMAKGVNVGISTIYYWIHHGKLGLSKQDLLYPRKGKALKKQASTNFKPAGQSIEQRPEAINLRLENGHYEIDTVLLTRAKNYCLLVLTDRKSRHQIIRLIPNKSAEVVNQALKLILKQHKILSITADNGTEFNRLFDVFAEEHIYYAHPYASWERGTNENHNRLIRRWLPKGTKKMTPKEVAFIEKWINNYPKKCLDYKSPREDFWMANLNLKFSKMEIIFIKRFQ

⊟Experimental data

• protein localization:
• interaction partners:

⊟Expression & Regulation

⊟Operon

⊟Regulation

• regulator:

⊟Expression data

• PneumoExpress for strain D39V: SPV_1342 PneumoExpress

⊞Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊞Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications