From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 30-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae R6
  • locus tag: spr1380 [new locus tag: SPR_RS06865 ]
  • pan locus tag?: PNEUPAN002810000
  • symbol: spr1380
  • pan gene symbol?: lmrA_2
  • synonym:
  • product: ABC transporter, truncation

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: spr1380 [new locus tag: SPR_RS06865 ]
  • symbol: spr1380
  • product: ABC transporter, truncation
  • replicon: chromosome
  • strand: -
  • coordinates: 1362403..1363026
  • length: 624
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: AE007317 (1362403..1363026) NCBI
  • BioCyc:
  • MicrobesOnline: 134264 MicrobesOnline
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    TTGACTTCTGCCATTGTCAATGACACGAGTGTCATTCGTGAGTTTTTAATTACGACTTTC
    CCAAATATTATTCTGAGTTTAGTTATGGTACTTGGTTCCATTGTAGTCTTATTTAGTCTT
    GATTGGAATCTTTCTCTACTTTTATTCATCACTCTTCCTTGTATGATGTTTATTATCTTG
    CCCCTTTCCAATATCAGTGAAAAGTATAGTCGTCGTTTACAGGAGGAAATCGGATTTTTA
    ACAGGGCAATTGACTGAAAAGATTCAAGAACATGAATTAATTAAGACTAACCAAGCAGAG
    AAAAGTGTACAGGATGTTTTGGATAATTGTATTGAAAGGGTACAAAACAATTCACTGAAA
    TCAGATAGGGTTACTTCTTTTGAGACCTCGTTTGCTCTCTTATTTATCTTTGCGGCTATA
    GCTGTGATGCTAACCTATGGGGGTTATCGGGTCAGCGCAGGATATATATCTGTGGGAACC
    TTGGTTTCGTTTTTGATTTACCTCTTTCAATTACTTAATCCTATTAGTAATATAGCTAAT
    TTTGTAACTGTTTATTCTAGGAGCAAGGGATCTTCAGTTGCACTGGAGAACTTGCTTGCA
    GTTCCTAAAGAAAAATTTGAGTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    624

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: spr1380 [new locus tag: SPR_RS06865 ]
  • symbol: spr1380
  • description: ABC transporter, truncation
  • length: 207
  • theoretical pI: 4.95766
  • theoretical MW: 23207
  • GRAVY: 0.528019

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Pathogenesis type I secretion system ATPase (TIGR03375; HMM-score: 72.6)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type I secretion system ATPase (TIGR03375; HMM-score: 72.6)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides lipid A export permease/ATP-binding protein MsbA (TIGR02203; HMM-score: 68.4)
    Metabolism Transport and binding proteins Other lipid A export permease/ATP-binding protein MsbA (TIGR02203; HMM-score: 68.4)
    ABC transporter, permease/ATP-binding protein (TIGR02204; HMM-score: 65.1)
    Metabolism Transport and binding proteins Other antigen peptide transporter 2 (TIGR00958; HMM-score: 62.5)
    and 13 more
    Cellular processes Cellular processes Biosynthesis of natural products NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein (TIGR03796; HMM-score: 51.7)
    Metabolism Transport and binding proteins Amino acids, peptides and amines NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein (TIGR03796; HMM-score: 51.7)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking ABC-type bacteriocin transporter (TIGR01193; HMM-score: 41.9)
    Genetic information processing Protein fate Protein modification and repair ABC-type bacteriocin transporter (TIGR01193; HMM-score: 41.9)
    Metabolism Transport and binding proteins Other ABC-type bacteriocin transporter (TIGR01193; HMM-score: 41.9)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type I secretion system ATPase (TIGR01846; HMM-score: 37.5)
    Cellular processes Cellular processes Biosynthesis of natural products NHLM bacteriocin system ABC transporter, ATP-binding protein (TIGR03797; HMM-score: 37.2)
    Metabolism Transport and binding proteins Amino acids, peptides and amines NHLM bacteriocin system ABC transporter, ATP-binding protein (TIGR03797; HMM-score: 37.2)
    thiol reductant ABC exporter, CydC subunit (TIGR02868; HMM-score: 31.6)
    thiol reductant ABC exporter, CydD subunit (TIGR02857; HMM-score: 26.8)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type I secretion system ATPase (TIGR01842; HMM-score: 26.3)
    Genetic information processing Protein fate Protein folding and stabilization cytochrome c-type biogenesis protein CcmI (TIGR03142; HMM-score: 14.6)
    Metabolism Energy metabolism Electron transport cytochrome c-type biogenesis protein CcmI (TIGR03142; HMM-score: 14.6)
  • TheSEED  :
    • Lipid A export ATP-binding/permease protein MsbA
  • PFAM:
    ABC_membrane (CL0241) ABC_membrane; ABC transporter transmembrane region (PF00664; HMM-score: 91.5)
    and 3 more
    ABC_membrane_3; ABC transporter transmembrane region (PF13748; HMM-score: 13.4)
    no clan defined Cpta_toxin; Membrane-bound toxin component of toxin-antitoxin system (PF07254; HMM-score: 13)
    DUF2207; Predicted membrane protein (DUF2207) (PF09972; HMM-score: 10.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 4
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0002
    • Cytoplasmic Membrane Score: 0.9773
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0225
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001214
    • TAT(Tat/SPI): 0.000105
    • LIPO(Sec/SPII): 0.003573
  • predicted transmembrane helices (TMHMM): 4

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTSAIVNDTSVIREFLITTFPNIILSLVMVLGSIVVLFSLDWNLSLLLFITLPCMMFIILPLSNISEKYSRRLQEEIGFLTGQLTEKIQEHELIKTNQAEKSVQDVLDNCIERVQNNSLKSDRVTSFETSFALLFIFAAIAVMLTYGGYRVSAGYISVGTLVSFLIYLFQLLNPISNIANFVTVYSRSKGSSVALENLLAVPKEKFE

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=spr1380&oldid=130040"