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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 30-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae R6
- locus tag: spr1796 [new locus tag: SPR_RS09015 ]
- pan locus tag?: PNEUPAN003598000
- symbol: spr1796
- pan gene symbol?: thiN
- synonym:
- product: Conserved hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: spr1796 [new locus tag: SPR_RS09015 ]
- symbol: spr1796
- product: Conserved hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1768112..1768795
- length: 684
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: AE007317 (1768112..1768795) NCBI
- BioCyc: SPR1796 BioCyc
- MicrobesOnline: 134679 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_1779 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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661ATGTCTTTAAGGGAGAAGTCAATGAGCGAGTACAAACTCTCAGAAAACAACTGGACTAGG
GTTGCCGTTTTTGCAGGCGGAAACCGCGGTCATTATCGGACAGATTTTGATGCTTTTGTT
GGGGTGGATCGAGGCTCGCTCTGGGTCTTGGAAGAAGACTTACCTCTTGCTCTAGCAGTC
GGAGATTTTGATTCTGTGACGGAAGAAGAGCGACAGGTGATTCAAAAACGTGCCCAGTAT
TTTGTCCAAGCACGACCAGAAAAGGATGATACAGATCTGGAATTGGCTCTCTTAACCATC
TTTGAACAAAATCCTCAGGCTCAGGTCACTATTTTCGGTGCCTTGGGTGGCCGTATTGAC
CATATGTTGGCCAATGTCTTTCTACCTAGCAATCCTAAGTTGGCACCCTATATGCGTCAA
ATAGAAATTGAGGATGGGCAAAATTTGATTGCCTATTGTTCAGAAGGGACCAGTCAGCTA
GAACCTCGTTCAGACTACGACTATCTAGCCTTTATGCCAGTTCGGGATAGCCAGCTGACT
ATTCTTGGAGCTAAGTATGAGTTGACAGAGGAGAATTTTTTCTTTAAAAAAGTGTACGCT
TCTAACGAATATATAGATAGGGAAGTGTCGGTAACTTGCCCAGATGGTTATGTGGTCGTA
CTGCATAGCAAGGACAGGAGGTAG60
120
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684
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: spr1796 [new locus tag: SPR_RS09015 ]
- symbol: spr1796
- description: Conserved hypothetical protein
- length: 227
- theoretical pI: 4.4506
- theoretical MW: 25972
- GRAVY: -0.39207
⊟Function[edit | edit source]
- TIGRFAM: Biosynthesis of cofactors, prosthetic groups, and carriers Thiamine thiamine pyrophosphokinase (TIGR01378; EC 2.7.6.2; HMM-score: 169.2)
- TheSEED :
- Thiamin pyrophosphokinase (EC 2.7.6.2)
- PFAM: no clan defined TPK_catalytic; Thiamin pyrophosphokinase, catalytic domain (PF04263; HMM-score: 59.9)and 1 moreTPK_B1_binding; Thiamin pyrophosphokinase, vitamin B1 binding domain (PF04265; HMM-score: 33)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 1.78
- Cytoplasmic Membrane Score: 8.16
- Cellwall Score: 0.06
- Extracellular Score: 0.01
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9993
- Cytoplasmic Membrane Score: 0.0002
- Cell wall & surface Score: 0
- Extracellular Score: 0.0005
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.002466
- TAT(Tat/SPI): 0.000245
- LIPO(Sec/SPII): 0.000426
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MSLREKSMSEYKLSENNWTRVAVFAGGNRGHYRTDFDAFVGVDRGSLWVLEEDLPLALAVGDFDSVTEEERQVIQKRAQYFVQARPEKDDTDLELALLTIFEQNPQAQVTIFGALGGRIDHMLANVFLPSNPKLAPYMRQIEIEDGQNLIAYCSEGTSQLEPRSDYDYLAFMPVRDSQLTILGAKYELTEENFFFKKVYASNEYIDREVSVTCPDGYVVVLHSKDRR
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1779 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]