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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 30-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae R6
- locus tag: spr1795 [new locus tag: SPR_RS09010 ]
- pan locus tag?: PNEUPAN003572000
- symbol: spr1795
- pan gene symbol?: rmuC
- synonym:
- product: Conserved hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: spr1795 [new locus tag: SPR_RS09010 ]
- symbol: spr1795
- product: Conserved hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1766854..1768152
- length: 1299
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: AE007317 (1766854..1768152) NCBI
- BioCyc: SPR1795 BioCyc
- MicrobesOnline: 134678 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_1778 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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1261ATGGTTATGTGGTCGTACTGCATAGCAAGGACAGGAGGTAGGATGGAAAGTTTACTTATT
CTATTATTAATTGCCAACCTAGCTGGTCTCTTTCTGATTTGGCAAAGGCAGGATAGGCAG
GAGAAACACTTAAGTAAGAGCTTGGAGGATCAGGCAGATCATTTGTCAGACCAGTTGGAT
TACCGCTTTGACCAAGCCAGACAAGCCAGCCAGTTAGACCAAAAAGATTTGGAAGTGGCT
GTCAGCGACCGTTTGCAAGAAGTGCGGATTGAATTGCACCAAGGCCTGACCCAAGTCCGT
CAAGAAATGACAGATAATCTCCTCCAAACTAGAGACAAGACAGACCAACGTCTCCAAGCC
TTGCAGGAATCAAATGAGCAACGTTTGGAACAAATGCGCCAGACGGTCGAGGAAAAACTA
GAAAAGACCTTGCAGACACGCTTACAGGCTTCCTTTGAGATAGTTTCTAAACAACTGGAG
TCTGTCAATCGTGGTCTTGGAGAAATGCAGACAGTTGCCCGTGATGTCGGAGCTCTTAAC
AAGGTTCTCTCTGGAACCAAGACGCGAGGGATTCTGGGAGAATTGCAACTGGGGCAAATT
ATTGAAGACATCATGACACCTGCCCAGTACGAACGAGAATACGCAACGGTTGAAAACTCT
AGTGAACGAGTGGAGTATGCCATCAAGTTACCCGGACAAGGCGACCAAGAATACGTCTAT
CTGCCAATTGACTCTAAGTTTCCACTGGCAGATTATTACCGCTTGGAAGAAGCCTATGAG
ACAGGTGACAAGGATGAGATTGAACGCTGTCGTAAGTCACTCCTAGCAAGCGTCAAGCGC
TTTGCCAAGGATATCAAGAGCAAGTACATAGCACCGCCTCGGACAACCAATTTTGGAATC
TTGTTTGTTCCGACAGAAGGTCTTTATTCAGAGATTGTGCGCAATCCGGTCTTCTTTGAT
GATTTGAGACGGGAAGAACAGATTATCGTTGCAGGACCAAGTACCCTATCAGCCCTTCTT
AACTCCCTATCAGTTGGTTTCAAGACCCTTAATATCCAAAAGAGTGCCGACCATATCAGC
AAGACTCTTGCCAGTGTCAAGACCGAGTTTGGCAAGTTTGGTGGTATTCTGGTCAAGGCA
CAAAAACATCTCCAACATGCCTCTGGCAATATTGATGAATTATTAAACCGTCGTACCATA
GCTATCGAGCGGACGCTCCGTCACATTGAGTTGTCAGAAGGCGAGCCTGCGCTTGATCTA
CTCCATTTTCAAGAAAATGAGGAAGAATATGAAGATTAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: spr1795 [new locus tag: SPR_RS09010 ]
- symbol: spr1795
- description: Conserved hypothetical protein
- length: 432
- theoretical pI: 4.97512
- theoretical MW: 49503.7
- GRAVY: -0.521065
⊟Function[edit | edit source]
- TIGRFAM: Fatty acid and phospholipid metabolism Biosynthesis poly(hydroxyalkanoate) granule-associated protein (TIGR01837; HMM-score: 10.1)and 1 moreintegral membrane protein, YccS/YhfK family (TIGR01667; HMM-score: 6)
- TheSEED :
- DNA recombination protein RmuC
- PFAM: PDDEXK (CL0236) RmuC; RmuC family (PF02646; HMM-score: 238.7)and 7 moreno clan defined Apolipoprotein; Apolipoprotein A1/A4/E domain (PF01442; HMM-score: 20.3)Baculo_PEP_C; Baculovirus polyhedron envelope protein, PEP, C terminus (PF04513; HMM-score: 13.3)Exonuc_VII_L; Exonuclease VII, large subunit (PF02601; HMM-score: 9)HSCB_C; HSCB C-terminal oligomerisation domain (PF07743; HMM-score: 8.9)GT-B (CL0113) FUT8_N_cat; Alpha-(1,6)-fucosyltransferase N- and catalytic domains (PF19745; HMM-score: 7.8)no clan defined DUF4446; Protein of unknown function (DUF4446) (PF14584; HMM-score: 6.6)Prominin; Prominin (PF05478; HMM-score: 4.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 1.78
- Cytoplasmic Membrane Score: 8.16
- Cellwall Score: 0.06
- Extracellular Score: 0.01
- Internal Helix: 1
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.038044
- TAT(Tat/SPI): 0.003661
- LIPO(Sec/SPII): 0.029407
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MVMWSYCIARTGGRMESLLILLLIANLAGLFLIWQRQDRQEKHLSKSLEDQADHLSDQLDYRFDQARQASQLDQKDLEVAVSDRLQEVRIELHQGLTQVRQEMTDNLLQTRDKTDQRLQALQESNEQRLEQMRQTVEEKLEKTLQTRLQASFEIVSKQLESVNRGLGEMQTVARDVGALNKVLSGTKTRGILGELQLGQIIEDIMTPAQYEREYATVENSSERVEYAIKLPGQGDQEYVYLPIDSKFPLADYYRLEEAYETGDKDEIERCRKSLLASVKRFAKDIKSKYIAPPRTTNFGILFVPTEGLYSEIVRNPVFFDDLRREEQIIVAGPSTLSALLNSLSVGFKTLNIQKSADHISKTLASVKTEFGKFGGILVKAQKHLQHASGNIDELLNRRTIAIERTLRHIELSEGEPALDLLHFQENEEEYED
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1778 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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