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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 30-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae R6
- locus tag: spr1905 [new locus tag: SPR_RS09710 ]
- pan locus tag?: PNEUPAN003726000
- symbol: spr1905
- pan gene symbol?: ygfA
- synonym:
- product: Conserved hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: spr1905 [new locus tag: SPR_RS09710 ]
- symbol: spr1905
- product: Conserved hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1882383..1882928
- length: 546
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: AE007317 (1882383..1882928) NCBI
- BioCyc: SPR1905 BioCyc
- MicrobesOnline: 134787 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_1921 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541TTGTCTATGAAATCGGAATTACGCAAGCAAGTCTTGCATGAAATGAAGGCTATATCTCAA
GAGCAAAAACAGGCTATAGACCAAGCTTTAACCGAGCGGCTTTTACACCATCCCTTCTAC
CAAGAAGCCAAGGTCATCGCAACCTACCTCTCTTTTTCTCATGAGTTTCAAACGCGGGAA
CTGATTGAGCAGGCGCTGAAGGACGGCAAGAAGGTTTTAATACCCAAAACTTATCCCAAG
GGGCGCATGGAGTTTGTGGCCTATGATCCGCAACAGTTGGTAAAAACTTCCTTTGCCTTA
CTGGAGCCACAGGGAGATGTGGAAGTGGTGGATGCATCTCAGATTGATTTGATTCATGTT
CCTGGTCTGGCTTTTACGACGAAAGGATATCGGATAGGATACGGTGGAGGCTATTATGAC
CGCTATCTGGAACATTTTTCTGGTCGTACTTTGAGTACGATATATCCTTGTCAAATTCAG
GACTTTATACCTGAAAACCATGATATTCCTGTTCAGGAGGTATTAATTGATGAAGGAAAT
CTTTGA60
120
180
240
300
360
420
480
540
546
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: spr1905 [new locus tag: SPR_RS09710 ]
- symbol: spr1905
- description: Conserved hypothetical protein
- length: 181
- theoretical pI: 5.87827
- theoretical MW: 20788.6
- GRAVY: -0.383425
⊟Function[edit | edit source]
- TIGRFAM: Central intermediary metabolism One-carbon metabolism 5-formyltetrahydrofolate cyclo-ligase (TIGR02727; EC 6.3.3.2; HMM-score: 180.3)
- TheSEED :
- 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2)
Carbohydrates One-carbon Metabolism One-carbon metabolism by tetrahydropterines 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2)and 2 more - PFAM: ISOCOT_Fold (CL0246) 5-FTHF_cyc-lig; 5-formyltetrahydrofolate cyclo-ligase family (PF01812; HMM-score: 154.7)and 1 moreno clan defined DUF4790; Domain of unknown function (DUF4790) (PF16037; HMM-score: 13.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.001431
- TAT(Tat/SPI): 0.000365
- LIPO(Sec/SPII): 0.000252
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MSMKSELRKQVLHEMKAISQEQKQAIDQALTERLLHHPFYQEAKVIATYLSFSHEFQTRELIEQALKDGKKVLIPKTYPKGRMEFVAYDPQQLVKTSFALLEPQGDVEVVDASQIDLIHVPGLAFTTKGYRIGYGGGYYDRYLEHFSGRTLSTIYPCQIQDFIPENHDIPVQEVLIDEGNL
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: spr1904 < spr1905 < hipO < dapD
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1921 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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