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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 30-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae R6
- locus tag: spr1989 [new locus tag: SPR_RS10140 ]
- pan locus tag?: PNEUPAN003853000
- symbol: spr1989
- pan gene symbol?: glpO
- synonym:
- product: Glycerol-3-phosphate dehydrogenase, truncation
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: spr1989 [new locus tag: SPR_RS10140 ]
- symbol: spr1989
- product: Glycerol-3-phosphate dehydrogenase, truncation
- replicon: chromosome
- strand: -
- coordinates: 1980346..1980843
- length: 498
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: AE007317 (1980346..1980843) NCBI
- BioCyc: SPR1989 BioCyc
- MicrobesOnline: 134871 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_2012 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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421
481ATGGAGCGCGTGGTTGACATCCTCAAAGCAGAATTTGACCGTAGCTTTAAATTGATCAAT
TCTAAAACTTACCCTGTTTCAGGTGGAGAATTGAACCCAGCAAATGTGGATTCAGAAATC
GAAGCCTTTGCGCAACTTGGAGTTTCACGTGGTTTGGATAGCAAGGAAGCTCATTACCTA
GCAAATCTTTACGGTTCAAATGCACCGAAGGTCTTTGCACTTGCTCACAGCTTGGAACAA
GCGCCAGGACTCAGCTTGGCAGATACTTTGTCCCTTCACTATGCAATGCGCAACGAGTTG
GCTCTTAGCCCAGTTGACTTCCTTCTTCGTCGTACCAACCATATGCTCTTTATGCGTGAT
AGCTTGGATAGCATCGTTGAGCCAGTTTTGGATGAAATGGGACGATTCTATGACTGGACA
GAAGAAGAAAAAGCAACTTACCGTGCTGATGTCGAAGCAGCTCTCGCTAACAACGATTTA
GCAGAATTAAAAAATTAA60
120
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498
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: spr1989 [new locus tag: SPR_RS10140 ]
- symbol: spr1989
- description: Glycerol-3-phosphate dehydrogenase, truncation
- length: 165
- theoretical pI: 4.47921
- theoretical MW: 18452.7
- GRAVY: -0.250909
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED :
- Alpha-glycerophosphate oxidase (EC 1.1.3.21)
Carbohydrates Sugar alcohols Glycerol and Glycerol-3-phosphate Uptake and Utilization Alpha-glycerophosphate oxidase (EC 1.1.3.21)and 1 more - PFAM: Fer2_BFD (CL0667) DAO_C; C-terminal domain of alpha-glycerophosphate oxidase (PF16901; HMM-score: 67)and 1 moreno clan defined NUC; Nuclease domain (PF18510; HMM-score: 12.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 1.05
- Cytoplasmic Membrane Score: 8.78
- Cellwall Score: 0.08
- Extracellular Score: 0.09
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.009304
- TAT(Tat/SPI): 0.002638
- LIPO(Sec/SPII): 0.001085
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MERVVDILKAEFDRSFKLINSKTYPVSGGELNPANVDSEIEAFAQLGVSRGLDSKEAHYLANLYGSNAPKVFALAHSLEQAPGLSLADTLSLHYAMRNELALSPVDFLLRRTNHMLFMRDSLDSIVEPVLDEMGRFYDWTEEEKATYRADVEAALANNDLAELKN
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator: CcpA regulon
CcpA (TF) important in Global catabolite repression; RegPrecise transcription unit transferred from TIGR4 data RegPrecise
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_2012 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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