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serotype 1

NCBI: 30-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae R6
  • locus tag: spr2011 [new locus tag: SPR_RS10240 ]
  • pan locus tag?: PNEUPAN003912000
  • symbol: spr2011
  • pan gene symbol?: hpf
  • synonym: raiA
  • product: Conserved hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: spr2011 [new locus tag: SPR_RS10240 ]
  • symbol: spr2011
  • product: Conserved hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2004669..2005217
  • length: 549
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGATTAAATATAGTATCCGTGGTGAAAACCTAGAAGTAACAGAAGCAATTCGTGATTAT
    GTAGTTTCTAAACTCGAAAAGATCGAAAAGTACTTCCAACCAGAACAAGAGTTGGATGCC
    CGAATTAACTTAAAAGTTTATCGTGAAAAAACGGCTAAAGTGGAAGTAACGATTCCGCTT
    GGATCTATTACTCTCCGCGCAGAAGATGTATCTCAAGATATGTATGGTTCAATTGACCTT
    GTAACTGATAAAATTGAACGTCAGATTCGTAAAAATAAAACAAAAATCGAGCGTAAAAAT
    AAAAATAAGGTAGCAACTGGTCAATTATTTACAGATGCTTTGGTGGAAGATTCAAATATT
    GTCCAGTCTAAAGTTGTTCGTTCAAAACAAATTGATTTAAAACCAATGGATTTGGAAGAA
    GCAATTCTACAAATGGATTTATTGGGGCATGATTTCTTTATCTATGTGGATGTTGAAGAT
    CAGACAACCAATGTGATTTATCGTCGTGAGGATGGCGAAATTGGTTTGTTAGAGGTTAAA
    GAATCTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    549

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: spr2011 [new locus tag: SPR_RS10240 ]
  • symbol: spr2011
  • description: Conserved hypothetical protein
  • length: 182
  • theoretical pI: 4.80433
  • theoretical MW: 21099
  • GRAVY: -0.506593

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    Genetic information processing Protein synthesis Translation factors ribosomal subunit interface protein (TIGR00741; HMM-score: 96.7)
    and 2 more
    Metabolism Energy metabolism ATP-proton motive force interconversion Na,H/K antiporter P-type ATPase, alpha subunit (TIGR01106; EC 3.6.3.-; HMM-score: 14.6)
    Genetic information processing Protein synthesis tRNA aminoacylation serine--tRNA ligase (TIGR00414; EC 6.1.1.11; HMM-score: 11.8)
  • TheSEED  :
    • Ribosome hibernation promoting factor Hpf
    Protein Metabolism Protein biosynthesis Ribosome activity modulation  Ribosomal subunit interface protein
  • PFAM:
    RNase_H (CL0219) Ribosomal_S30AE; Sigma 54 modulation protein / S30EA ribosomal protein (PF02482; HMM-score: 92.7)
    no clan defined Ribosom_S30AE_C; Sigma 54 modulation/S30EA ribosomal protein C terminus (PF16321; HMM-score: 86.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001454
    • TAT(Tat/SPI): 0.001239
    • LIPO(Sec/SPII): 0.000222
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MIKYSIRGENLEVTEAIRDYVVSKLEKIEKYFQPEQELDARINLKVYREKTAKVEVTIPLGSITLRAEDVSQDMYGSIDLVTDKIERQIRKNKTKIERKNKNKVATGQLFTDALVEDSNIVQSKVVRSKQIDLKPMDLEEAILQMDLLGHDFFIYVDVEDQTTNVIYRREDGEIGLLEVKES

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • ⊞regulator: CcpA regulon

⊟Expression data[edit | edit source]

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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