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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 13-OCT-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae NCTC7465
  • locus tag: AT689_RS07435 [old locus tag: ERS445053_01453 ]
  • pan locus tag?: PNEUPAN002595000
  • symbol: AT689_RS07435
  • pan gene symbol?: efeU
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: AT689_RS07435 [old locus tag: ERS445053_01453 ]
  • symbol: AT689_RS07435
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1383627..1384172
  • length: 546
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NZ_LN831051 (1383627..1384172) NCBI
  • BioCyc: AT689_RS07435 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_1155 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    TTGCTTGTTTTAGCTTTGTCATTTTTAATTCTTTCCCCAGTAGGTGCCCAAGAAAGTTTG
    AGTTCTTATTTCGTAAAAATCACAGATACTTCTAAAGCGGTCAAAAATGGCAATCAGTCT
    GAGGCCCAGAAACTTGTTCAAGAGATGGCATCAGACTTCGAAAGAGTAGAAAATAAGGAT
    TCTGAGGTTGGTAAGATTGTTAAGGAAAAGTTAGCTCTATCTGGAGATATTACTGAAGCC
    AAACTCACCGAAATTTCCTCAGCTCTATTAGCTTTTGAAAAAGAACAAAATCCTGTTGAC
    CTAGATGCGGAAAAGGAAAAATTGGTAAACCGTCTAAGTCCTCGTTTTGAAACCTTAGAG
    CAGGCCATTGCCTCCAAAGATTTGGAAAAAGTCCGAGAAGCTTTTAAGAAAATGAATTCC
    ACTTGGACCATCAATGAAAGTGTGGTTCGTGACAATAGTATAGCTCATTATGGACGTGTT
    GAAACAGCTATTTCCTTCCTGCCTAGTAGCATGGAAACCGAACCTACAGATGAGTCTGGA
    ACATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    546

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: AT689_RS07435 [old locus tag: ERS445053_01453 ]
  • symbol: AT689_RS07435
  • description: hypothetical protein
  • length: 181
  • theoretical pI: 4.51254
  • theoretical MW: 20046.5
  • GRAVY: -0.367956

⊟Function[edit | edit source]

  • TIGRFAM:
    XXXCH domain (TIGR04358; HMM-score: 16.8)
    and 1 more
    antimicrobial peptide, SdpC family (TIGR04032; HMM-score: 11.8)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    no clan defined DUF4363; Domain of unknown function (DUF4363) (PF14276; HMM-score: 23)
    and 9 more
    SMBP; Small metal-binding protein (PF16785; HMM-score: 17.1)
    Cytochrom_B562; Cytochrome b562 (PF07361; HMM-score: 16.9)
    Apolipoprotein; Apolipoprotein A1/A4/E domain (PF01442; HMM-score: 15.2)
    EzrA; Septation ring formation regulator, EzrA (PF06160; HMM-score: 14.8)
    YfdX; YfdX protein (PF10938; HMM-score: 13.9)
    Pec_lyase-like (CL0268) FapA; Flagellar Assembly Protein A beta solenoid domain (PF03961; HMM-score: 13.3)
    no clan defined DUF3347; Protein of unknown function (DUF3347) (PF11827; HMM-score: 12.5)
    2H (CL0247) LigT_PEase; LigT like Phosphoesterase (PF02834; HMM-score: 12)
    no clan defined Holin_BhlA; BhlA holin family (PF10960; HMM-score: 10.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.32
    • Cytoplasmic Membrane Score: 9.55
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0051
    • Cytoplasmic Membrane Score: 0.7158
    • Cell wall & surface Score: 0.0108
    • Extracellular Score: 0.2683
  • SignalP: Signal peptide SP(Sec/SPI) length 16 aa
    • SP(Sec/SPI): 0.55352
    • TAT(Tat/SPI): 0.002505
    • LIPO(Sec/SPII): 0.051773
    • Cleavage Site: CS pos: 16-17. VGA-QE. Pr: 0.3841
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_001844616 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MLVLALSFLILSPVGAQESLSSYFVKITDTSKAVKNGNQSEAQKLVQEMASDFERVENKDSEVGKIVKEKLALSGDITEAKLTEISSALLAFEKEQNPVDLDAEKEKLVNRLSPRFETLEQAIASKDLEKVREAFKKMNSTWTINESVVRDNSIAHYGRVETAISFLPSSMETEPTDESGT

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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