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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 24-APR-2025

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae Hungary19A-6
  • locus tag: SPH_RS06970 [old locus tag: SPH_1442 ]
  • pan locus tag?: PNEUPAN002595000
  • symbol: SPH_RS06970
  • pan gene symbol?: efeU
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPH_RS06970 [old locus tag: SPH_1442 ]
  • symbol: SPH_RS06970
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1333912..1334400
  • length: 489
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_010380 (1333912..1334400) NCBI
  • BioCyc: SPH_RS06970 BioCyc
  • MicrobesOnline: see SPH_1442
  • PneumoBrowse for strain D39V: SPV_1155 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    TTGAGTTCTTATTTCGTAAAAATCACAGATGCATCCAAAGCGGTTAAAAATGGTGATCAG
    GCTGAGGTCCAGAAACTCGTTACGAAGATGGCATCAGACTTCGAAAGAGTAGAAAATAAG
    GATTCTGAGGTTGGTAAGATTGTTAAGGAAAAGTTAGCTCTATCTGGAGATATTACTGAA
    GCCAAACTCACCGAAATTTCCTCAGCTCTATTAGCTTTTGAAAAAGAACAAAATCCTGTT
    GACCTAGATGCGGAAAAGGAAAAATTGGTAAACCGTCTAAGTCCTCGTTTTGAAACCTTA
    GAGCAGGCCATTGCCTCCAAAGATTTGGAAAAAGTCCGAGAAGCTTTTAAGAAAATGAAT
    TCCACTTGGACCATCAATGAAAGTGTGGTTCGTGACAATAGTACAGCTCATTATGGACGT
    GTTGAAACAGCTATTTCCTTCCTGCCTAGTAGCATGGAAACCGAACCTACAGATGAGTCT
    GGAACATGA
    60
    120
    180
    240
    300
    360
    420
    480
    489

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPH_RS06970 [old locus tag: SPH_1442 ]
  • symbol: SPH_RS06970
  • description: hypothetical protein
  • length: 162
  • theoretical pI: 4.64772
  • theoretical MW: 18037.1
  • GRAVY: -0.571605

⊟Function[edit | edit source]

  • TIGRFAM:
    antimicrobial peptide, SdpC family (TIGR04032; HMM-score: 16.9)
    XXXCH domain (TIGR04358; HMM-score: 15.6)
  • TheSEED: see SPH_1442
  • PFAM:
    no clan defined DUF4363; Domain of unknown function (DUF4363) (PF14276; HMM-score: 22.1)
    and 9 more
    Pec_lyase-like (CL0268) FapA; Flagellar Assembly Protein A beta solenoid domain (PF03961; HMM-score: 16.2)
    no clan defined DUF1843; Domain of unknown function (DUF1843) (PF08898; HMM-score: 13.2)
    DUF3347; Protein of unknown function (DUF3347) (PF11827; HMM-score: 12.7)
    Cytochrom_B562; Cytochrome b562 (PF07361; HMM-score: 12.5)
    2H (CL0247) LigT_PEase; LigT like Phosphoesterase (PF02834; HMM-score: 12.2)
    no clan defined CDC37_C; Cdc37 C terminal domain (PF08564; HMM-score: 12)
    Cytochrom_C_2; Cytochrome C' (PF01322; HMM-score: 11.6)
    YfdX; YfdX protein (PF10938; HMM-score: 10.7)
    IZUMO; Izumo sperm-egg fusion, Ig domain-associated (PF15005; HMM-score: 10.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.2426
    • Cytoplasmic Membrane Score: 0.4706
    • Cell wall & surface Score: 0.0349
    • Extracellular Score: 0.2519
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005504
    • TAT(Tat/SPI): 0.000365
    • LIPO(Sec/SPII): 0.000739
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSSYFVKITDASKAVKNGDQAEVQKLVTKMASDFERVENKDSEVGKIVKEKLALSGDITEAKLTEISSALLAFEKEQNPVDLDAEKEKLVNRLSPRFETLEQAIASKDLEKVREAFKKMNSTWTINESVVRDNSTAHYGRVETAISFLPSSMETEPTDESGT

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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