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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 28-AUG-2013

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae TCH8431/19A
  • locus tag: HMPREF0837_10746 [new locus tag: HMPREF0837_RS03620 ]
  • pan locus tag?: PNEUPAN001300000
  • symbol: HMPREF0837_10746
  • pan gene symbol?: glnHP1
  • synonym:
  • product: ABC transporter, permease protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: HMPREF0837_10746 [new locus tag: HMPREF0837_RS03620 ]
  • symbol: HMPREF0837_10746
  • product: ABC transporter, permease protein
  • replicon: chromosome
  • strand: -
  • coordinates: 675478..677001
  • length: 1524
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    ATGCTAGGACTTGTCAATGTTGCTCAAGCCGATGAATATTTACGCATCGGGATGGAAGCA
    GCATATGCTCCCTTTAACTGGACCCAGGATGATGATAGCAACGGAGCTGTCAAAATCGAT
    GGGACCAATCAGTATGCCAACGGATACGATGTTCAAATCGCCAAGAAAATCGCTAAGGAC
    TTAGGTAAAGAACCTTTGGTTGTTAAAACCAAGTGGGAAGGTCTAGTCCCTGCCCTTACT
    TCTGGTAAGATTGACATGATTATCGCAGGTATGAGTCCAACTGCAGAACGCAAACAAGAA
    ATTGCCTTTTCGAGCAGTTACTACACTAGCGAACCAGTTTTGCTTGTCAAAAAAGATTCT
    GCCTACGTAAGTGCTAAATCTTTGGATGACTTTAACGGTGCAAAAATCACTTCTCAACAA
    GGGGTCTACCTCTACGACTTGATTGCACAAATCCCAGGTGCTAAAAAAGAAACAGCCATG
    GGAGACTTCGCTCAAATGCGCCAAGCTCTTGAGGCTGGTGTCATTGATGCTTATGTTTCT
    GAACGTCCAGAAGCACTGACTGCTGAAGCTGCGAACTCTAAGTTCAAGATGATTCAAGTA
    GAACCTGGTTTCAAAACTGGGGAAGAAGATACAGCTATCGCTATCGGGCTTCGTAAAAAT
    GACAATCGTATTAGCCAAATCAATGCCAGCATTGAAACCATTTCAAAAGATGACCAAGTT
    GCCTTGATGGATCGTATGATCAAGGAACAACCTGCCGAAGCTACAACAACTGAAGAGACT
    AGCAGTAGTTTCTTTAGCCAAGTCGCTAAAATTCTTTCTGAAAACTGGCAACAACTCTTG
    CGTGGTGCTGGTATCACTCTTTTAATCTCTATCGTCGGAACCATCATAGGTCTCATTATT
    GGACTTGCCATTGGTGTCTTCCGTACTGCTCCTCTCTCTGAAAACAAAGCCATTTATGGC
    CTTCAAAAACTAGTCGGCTGGGTTCTCAATGTCTACATTGAAATTTTCCGTGGTACGCCA
    ATGATTGTTCAATCGATGGTTATCTACTATGGAACTGCCCAAGCTTTCGGGATCAACCTT
    GACCGTACACTAGCTGCTATCTTCATCGTTTCAATCAATACCGGTGCCTACATGACTGAA
    ATCGTCCGTGGTGGTATCCTAGCAGTTGACAAGGGACAATTTGAAGCTGCGACTGCTCTT
    GGTATGACCCATAACCAGACCATGCGTAAGATTGTCCTACCTCAGGTAGTCCGTAACATC
    CTACCTGCAACTGGTAATGAATTTGTCATCAATATCAAAGATACATCTGTATTGAACGTT
    ATCTCTGTTGTCGAACTTTATTTCTCAGGAAATACCGTGGCAACACAAACCTATCAATAC
    TTCCAGACATTTACAATCATCGCCGTGATTTACTTTGTCCTCACCTTCACCGTAACACGT
    ATCCTACGCTTTATCGAGCGCAGAATGGACATGGATACCTACACTACAGGTGCTAACCAA
    ATGCAAACGGAGGATTTGAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1524

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: HMPREF0837_10746 [new locus tag: HMPREF0837_RS03620 ]
  • symbol: HMPREF0837_10746
  • description: ABC transporter, permease protein
  • length: 507
  • theoretical pI: 4.84509
  • theoretical MW: 55706.7
  • GRAVY: 0.0706114

⊟Function[edit | edit source]

  • TIGRFAM:
    ectoine/hydroxyectoine ABC transporter, permease protein EhuD (TIGR03003; HMM-score: 144)
    ectoine/hydroxyectoine ABC transporter, permease protein EhuC (TIGR03004; HMM-score: 142.7)
    and 11 more
    Metabolism Transport and binding proteins Amino acids, peptides and amines lysine-arginine-ornithine-binding periplasmic protein (TIGR01096; HMM-score: 105.2)
    Metabolism Transport and binding proteins Amino acids, peptides and amines amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family (TIGR01726; HMM-score: 74.5)
    Metabolism Transport and binding proteins Anions phosphonate ABC transporter, permease protein PhnE (TIGR01097; HMM-score: 49.8)
    Metabolism Transport and binding proteins Amino acids, peptides and amines ectoine/hydroxyectoine ABC transporter solute-binding protein EhuB (TIGR02995; HMM-score: 36)
    quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein (TIGR03871; HMM-score: 24.1)
    Metabolism Transport and binding proteins Anions phosphate ABC transporter, permease protein PstA (TIGR00974; HMM-score: 23.3)
    Metabolism Transport and binding proteins Anions phosphate ABC transporter, permease protein PstC (TIGR02138; HMM-score: 21.3)
    Metabolism Transport and binding proteins Anions molybdate ABC transporter, permease protein (TIGR02141; HMM-score: 16.9)
    NifC-like ABC-type porter (TIGR01581; HMM-score: 16.3)
    choline ABC transporter, permease protein (TIGR03416; HMM-score: 15.1)
    2-aminoethylphosphonate ABC transporter, permease protein (TIGR03226; HMM-score: 13.4)
  • TheSEED  :
    • Predicted lysine transporter, lysine-binding protein/permease protein LysX
  • PFAM:
    PBP (CL0177) SBP_bac_3; Bacterial extracellular solute-binding proteins, family 3 (PF00497; HMM-score: 125.3)
    and 3 more
    BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 71.9)
    PBP (CL0177) Lig_chan-Glu_bd; Ligated ion channel L-glutamate- and glycine-binding site (PF10613; HMM-score: 34.5)
    SBP_bac_1; Bacterial extracellular solute-binding protein (PF01547; HMM-score: 19)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.01
    • Cytoplasmic Membrane Score: 9.99
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 2
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9998
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0002
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.033556
    • TAT(Tat/SPI): 0.00186
    • LIPO(Sec/SPII): 0.003996
  • predicted transmembrane helices (TMHMM): 5

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ADI68974 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MLGLVNVAQADEYLRIGMEAAYAPFNWTQDDDSNGAVKIDGTNQYANGYDVQIAKKIAKDLGKEPLVVKTKWEGLVPALTSGKIDMIIAGMSPTAERKQEIAFSSSYYTSEPVLLVKKDSAYVSAKSLDDFNGAKITSQQGVYLYDLIAQIPGAKKETAMGDFAQMRQALEAGVIDAYVSERPEALTAEAANSKFKMIQVEPGFKTGEEDTAIAIGLRKNDNRISQINASIETISKDDQVALMDRMIKEQPAEATTTEETSSSFFSQVAKILSENWQQLLRGAGITLLISIVGTIIGLIIGLAIGVFRTAPLSENKAIYGLQKLVGWVLNVYIEIFRGTPMIVQSMVIYYGTAQAFGINLDRTLAAIFIVSINTGAYMTEIVRGGILAVDKGQFEAATALGMTHNQTMRKIVLPQVVRNILPATGNEFVINIKDTSVLNVISVVELYFSGNTVATQTYQYFQTFTIIAVIYFVLTFTVTRILRFIERRMDMDTYTTGANQMQTEDLK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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