From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 23-MAR-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae BVJ1JL
  • locus tag: JN057_00673 [new locus tag: JN057_RS03300 ]
  • pan locus tag?: PNEUPAN001614000
  • symbol: glcK
  • pan gene symbol?: gki
  • synonym:
  • product: Glucokinase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JN057_00673 [new locus tag: JN057_RS03300 ]
  • symbol: glcK
  • product: Glucokinase
  • replicon: chromosome
  • strand: +
  • coordinates: 640704..641663
  • length: 960
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: CP071871 (640704..641663) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_0580 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGAGTCAAAAGATTATTGGGATTGACCTTGGTGGAACTTCTATCAAATTTGCAATCTTA
    ACAACAGCAGGAGAAATCCAAGGAAAATGGTCAATCAAGACCAACATTTTGGATGAGGGA
    AGTCATATCGTTGATGATATGATTGAGTCTATTCAACATCGTTTGGACTTGCTTGGATTG
    GCAGCAGCGGACTTCCAAGGTATTGGAATGGGATCACCAGGTGTGGTTGACCGTGAAAAA
    GGGACTGTTATCGGTGCCTACAACTTGAACTGGAAAACCCTTCAACCAATCAAACAAAAG
    ATTGAAAAAGCTTTGGGCATTCCATTTTTCATCGATAATGATGCCAACGTAGCAGCTCTT
    GGTGAGCGCTGGATGGGTGCTGGAGATAACCAACCAGACGTTGTCTTTATGACACTCGGT
    ACTGGTGTTGGTGGTGGTATTGTCGCAGAAGGCAAATTGCTTCATGGTGTTGCTGGTGCA
    GCAGGTGAACTTGGTCATATCACTGTTGACTTTGACCAACCAATCTCATGTACTTGTGGT
    AAAAAAGGCTGCCTTGAGACAGTTGCTTCAGCAACAGGGATTGTCAACTTGACTCGTCGC
    TATGCCGATGAATACGAAGGCGATGCAGCCTTGAAACGCTTGATTGATAACGGAGAAGAA
    GTAACTGCTAAGACTGTCTTTGATCTCGCAAAAGAAGGAGACGACCTTGCTTTGATTGTT
    TACCGTAACTTCTCACGTTACTTGGGAATCGCTTGTGCTAACATTGGTTCAATCCTAAAC
    CCATCAACAATCGTCATCGGTGGTGGTGTGTCAGCTGCGGGAGAATTCCTTCTACAAGGT
    GTTCAAAAAGTTTACGATGAAAATAGTTTCCCACAAGTACGCACATCTACTAAATTAGCT
    CTTGCAACTCTAGGAAATGACGCTGGAGTTATCGGAGCAGCATCACTTGTATTGCAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JN057_00673 [new locus tag: JN057_RS03300 ]
  • symbol: GlcK
  • description: Glucokinase
  • length: 319
  • theoretical pI: 4.62798
  • theoretical MW: 33437
  • GRAVY: 0.154232

⊟Function[edit | edit source]

  • reaction:
    EC 2.7.1.2?  ExPASy
    Glucokinase ATP + D-glucose = ADP + D-glucose 6-phosphate
  • TIGRFAM:
    Unknown function General ROK family protein (putative glucokinase) (TIGR00744; HMM-score: 342.6)
    and 1 more
    putative CoA-substrate-specific enzyme activase (TIGR00241; HMM-score: 13.1)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    Actin_ATPase (CL0108) ROK; ROK family (PF00480; HMM-score: 256.6)
    and 3 more
    BcrAD_BadFG; BadF/BadG/BcrA/BcrD ATPase family (PF01869; HMM-score: 20.3)
    FGGY_N; FGGY family of carbohydrate kinases, N-terminal domain (PF00370; HMM-score: 15.5)
    NADP_Rossmann (CL0063) DOT1; Histone methylation protein DOT1 (PF08123; HMM-score: 10.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.011131
    • TAT(Tat/SPI): 0.000383
    • LIPO(Sec/SPII): 0.004217
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: QTE32301 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MSQKIIGIDLGGTSIKFAILTTAGEIQGKWSIKTNILDEGSHIVDDMIESIQHRLDLLGLAAADFQGIGMGSPGVVDREKGTVIGAYNLNWKTLQPIKQKIEKALGIPFFIDNDANVAALGERWMGAGDNQPDVVFMTLGTGVGGGIVAEGKLLHGVAGAAGELGHITVDFDQPISCTCGKKGCLETVASATGIVNLTRRYADEYEGDAALKRLIDNGEEVTAKTVFDLAKEGDDLALIVYRNFSRYLGIACANIGSILNPSTIVIGGGVSAAGEFLLQGVQKVYDENSFPQVRTSTKLALATLGNDAGVIGAASLVLQ

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=JN057_00673&oldid=60592"