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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 24-MAR-2021
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae BVJ1JL
- locus tag: JN057_RS10020 [old locus tag: JN057_02054 ]
- pan locus tag?: PNEUPAN003610000
- symbol: JN057_RS10020
- pan gene symbol?: comGG
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JN057_RS10020 [old locus tag: JN057_02054 ]
- symbol: JN057_RS10020
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1926952..1927365
- length: 414
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NZ_CP071871 (1926952..1927365) NCBI
- BioCyc:
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_1857 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361GTGTGGAAAAAGAAGAAAGTTAAGGCAGGTGTTCTCCTCTATGCAGTCACCATGGCAGCT
ATCTTTAGTCTTTTGTTGCAATTTTACTTGAACCGACAAGTCGCCCACTATCAAGACTAT
GCTTTGAATAAAGAAAAATTGGTTGCTTTTGCCATGGCTAAACGAACCAAGGATAAAGCC
GAGCAAGAAAGTGGGGAACAGGTCTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACAAGCTTGGTGACGACTGTTCGTACGTCTAAGAGCCAATATGAGTTTCTGTTTCCTTCA
GTCAAAGTCAAAGAAGAGAAAAGAGATAAAAAGGAAGAGGTAGCGACCGATTCAAGCGAA
AAAGTGGAGAAGAAAAAATCAGAAGAGAAGCCTGAAAAGAAAGAGAATTCCTAG60
120
180
240
300
360
414
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JN057_RS10020 [old locus tag: JN057_02054 ]
- symbol: JN057_RS10020
- description: hypothetical protein
- length: 137
- theoretical pI: 10.2492
- theoretical MW: 15878.2
- GRAVY: -0.834307
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Cations and iron carrying compounds cation transporter family protein (TIGR00860; HMM-score: 10.5)and 1 moreTranscription DNA-dependent RNA polymerase DNA-directed RNA polymerase, beta subunit (TIGR02013; EC 2.7.7.6; HMM-score: 8.1)
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM: NTF2 (CL0051) DUF5104; Domain of unknown function (DUF5104) (PF17117; HMM-score: 15.4)no clan defined Collectrin; Renal amino acid transporter (PF16959; HMM-score: 12.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0.32
- Cytoplasmic Membrane Score: 9.55
- Cellwall Score: 0.12
- Extracellular Score: 0.01
- Internal Helix: 1
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.098328
- TAT(Tat/SPI): 0.002048
- LIPO(Sec/SPII): 0.011618
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_061370822 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MWKKKKVKAGVLLYAVTMAAIFSLLLQFYLNRQVAHYQDYALNKEKLVAFAMAKRTKDKAEQESGEQVFNLGQVSYQNKKTSLVTTVRTSKSQYEFLFPSVKVKEEKRDKKEEVATDSSEKVEKKKSEEKPEKKENS
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1857 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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