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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 14-DEC-2020
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae MDRSPN001
- locus tag: MDRSPN_RS08995 [old locus tag: MDRSPN_01715 ]
- pan locus tag?: PNEUPAN003520000
- symbol: MDRSPN_RS08995
- pan gene symbol?: cinA
- synonym:
- product: competence/damage-inducible protein A
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: MDRSPN_RS08995 [old locus tag: MDRSPN_01715 ]
- symbol: MDRSPN_RS08995
- product: competence/damage-inducible protein A
- replicon: chromosome
- strand: -
- coordinates: 1707292..1708548
- length: 1257
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NZ_AP018391 (1707292..1708548) NCBI
- BioCyc:
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_1740 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1201ATGAAAGCAGAAATTATTGCTGTTGGAACAGAAATTTTAACAGGGCAAATCGTCAATACC
AATGCTCAGTTTTTATCAGAGAAGCTAGCCGAAATTGGGGTAGATGTCTACTTCCAAACA
GCTGTCGGAGACAATGAAGCTCGTCTCTTGTCCTTGCTTGAGATTGCGAGCCAACGTAGT
AATCTTGTGATTTTGACAGGGGGCTTGGGACCAACTGAGGATGATTTGACCAAACAAACT
CTAGCTAAATTTTTAGGGAAAGAATTAGCCTTCGATCCTCAGTCGCAGGCAAAGTTGGAT
GTCTTTTTTGCTCAGAGACCAGACTATGCGAGAACACCAAATAATGAAAGACAAGCTCAA
CTTGTAGCAGGGTCGACTCCACTACCAAACGAAACAGGATTGGCTGTTGGAGGAATCTTA
GAAGTGGATGGCGTAGCCTACGTGGTCCTTCCGGGACCGCCAAGTGAGTTGAAACCCATG
GTCTTAAATCAACTTTTACCCAAGCTGATGACAGGCACCAAACTATATTCCCGAGTGCTT
CGTTTCTTTGGAATTGGTGAGAGTCAGTTGGTGACCATTTTGGCGGACTTGATTGACCAG
CAAACGGATCCGACCTTGGCTCCTTATGCCAAGACGGGAGAAGTGACTTTGCGCCTGTCT
ACAAAAGCAGTTAGTCAAGAAAAGGCTGATCAAGTACTAGATATCTTAGAAAATCAAATC
TTGGATCGCCAGACTTTTGAGGGAATTTCTCTGCGCGACATCTGTTATGGATATGGGGAA
GAAACCAGCCTCGCAAGTGTCGTTGTAGAAGAGCTAAAGAAGAGACAGAAAAGCATTACT
GCGGCAGAAAGCTTGACGGCAGGTCTCTTTCAGGCTACTTTAGCAGACTTTTCAGGTGTT
TCAGCTATCTTTAATGGAGGGTTTGTCACCTACAGCCTAGAAGAAAAGTCCAAGATGTTG
GATATTTCCGAGCAAGAGCTAAAAGAACACGGGGTCGTTTCTGAGTTTACGGCTCGAAAA
ATGGCAGAGCAGGCACGGCTCAAGACTCAGTCTGATTATGGAGTCAGTCTGACAGGTGTA
GCTGGGCCAGATAGCCTAGAGGGGCATCCCGCCGGCACAGTTTTTATTGGACTGGCACAT
GCAAAAGGGACAGAGGTGATCAAGGCTAATATCGCAGGACGGAGTCGAGCAGATGTACGT
CACATCGCGGTTATGCATGCCTTTAACCTAGCTCGTAAGGCTTTATTAAGTGACTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: MDRSPN_RS08995 [old locus tag: MDRSPN_01715 ]
- symbol: MDRSPN_RS08995
- description: competence/damage-inducible protein A
- length: 418
- theoretical pI: 4.8317
- theoretical MW: 45068.1
- GRAVY: -0.0318182
⊟Function[edit | edit source]
- TIGRFAM: DNA metabolism DNA replication, recombination, and repair competence/damage-inducible protein CinA N-terminal domain (TIGR00200; HMM-score: 379.2)and 3 moreDNA metabolism DNA replication, recombination, and repair amidohydrolase, PncC family (TIGR00199; EC 3.5.-.-; HMM-score: 129.3)molybdenum cofactor synthesis domain (TIGR00177; HMM-score: 88.1)Biosynthesis of cofactors, prosthetic groups, and carriers Molybdopterin molybdenum cofactor biosynthesis protein B (TIGR02667; HMM-score: 17.1)
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM: no clan defined CinA; Competence-damaged protein (PF02464; HMM-score: 165)and 2 moreMoCF_biosynth; Probable molybdopterin binding domain (PF00994; HMM-score: 108.8)CinA_KH; Damage-inducible protein CinA KH domain (PF18146; HMM-score: 73)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.013249
- TAT(Tat/SPI): 0.000193
- LIPO(Sec/SPII): 0.001375
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_061588623 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MKAEIIAVGTEILTGQIVNTNAQFLSEKLAEIGVDVYFQTAVGDNEARLLSLLEIASQRSNLVILTGGLGPTEDDLTKQTLAKFLGKELAFDPQSQAKLDVFFAQRPDYARTPNNERQAQLVAGSTPLPNETGLAVGGILEVDGVAYVVLPGPPSELKPMVLNQLLPKLMTGTKLYSRVLRFFGIGESQLVTILADLIDQQTDPTLAPYAKTGEVTLRLSTKAVSQEKADQVLDILENQILDRQTFEGISLRDICYGYGEETSLASVVVEELKKRQKSITAAESLTAGLFQATLADFSGVSAIFNGGFVTYSLEEKSKMLDISEQELKEHGVVSEFTARKMAEQARLKTQSDYGVSLTGVAGPDSLEGHPAGTVFIGLAHAKGTEVIKANIAGRSRADVRHIAVMHAFNLARKALLSD
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1740 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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