From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 04-SEP-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae BM6001
  • locus tag: ODS73_09185 [new locus tag: ODS73_RS09195 ]
  • pan locus tag?: PNEUPAN001385000
  • symbol: ODS73_09185
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: ODS73_09185 [new locus tag: ODS73_RS09195 ]
  • symbol: ODS73_09185
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1779282..1779731
  • length: 450
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: CP107038 (1779282..1779731) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    TTGCTCAAAGCAGTGTTTGAGGTTATAGATAAGACTGACGAAGTCAGCTTAAAACACTGT
    TTTGAGGTTGCAGATAGAACTGATGAAGTCAGCTTAAAACACTGTTTTGAGGTTGTAGAT
    GAAACTGACGAAGTCAGCTTAAAACACTGTTTTGAGGTTGCAGATAGAACTGACGAAGTC
    AGCTTAAAACACTGTTTTGAGGTTGCAGATAGAACTGACGAAGTCAGCTTAAAACACTGT
    TTTGAGGTTGTAGATGAAACTGACGAAGTCAGCTTAAAACACTGTTTTGAGGTTGTAGAT
    GAAACTGACGAAGTCAGCTTAAAACACTGTTTTGAGGTTGCAGATAGAACTGACGAAGTC
    AGTAACCATACCTACGGCAAGGTGAAGCTGACGTGGTTTGAAGAGATTTTCGAAGAGTAT
    CATACGAAAAAGCCCTGTTCCTCAAGATGA
    60
    120
    180
    240
    300
    360
    420
    450

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: ODS73_09185 [new locus tag: ODS73_RS09195 ]
  • symbol: ODS73_09185
  • description: hypothetical protein
  • length: 149
  • theoretical pI: 4.37844
  • theoretical MW: 17384.2
  • GRAVY: -0.489262

⊟Function[edit | edit source]

  • TIGRFAM:
    Unknown function General ROK family protein (putative glucokinase) (TIGR00744; HMM-score: 16.9)
  • TheSEED:
  • PFAM:
    no clan defined DNA_ligase_IV; DNA ligase IV (PF11411; HMM-score: 38.7)
    and 10 more
    Ribosomal_L11; Ribosomal protein L11, RNA binding domain (PF00298; HMM-score: 30.4)
    CM2; Influenza C virus M2 protein (PF03021; HMM-score: 19.2)
    SPFH (CL0433) MVP_shoulder; Shoulder domain (PF11978; HMM-score: 17.3)
    HTH (CL0123) MogR_DNAbind; DNA binding domain of the motility gene repressor (MogR) (PF12181; HMM-score: 14.6)
    no clan defined BBS2_C; Ciliary BBSome complex subunit 2, C-terminal (PF14782; HMM-score: 13.9)
    TBCA; Tubulin binding cofactor A (PF02970; HMM-score: 13.4)
    Corazonin; Pro-corazonin (PF17308; HMM-score: 12.4)
    GCK; GCK domain (PF07802; HMM-score: 10.8)
    DUF3638; Protein of unknown function (DUF3638) (PF12340; HMM-score: 7.6)
    SAB; SAB domain (PF04382; HMM-score: 6.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.4603
    • Cytoplasmic Membrane Score: 0.0005
    • Cell wall & surface Score: 0.001
    • Extracellular Score: 0.5382
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005809
    • TAT(Tat/SPI): 0.000173
    • LIPO(Sec/SPII): 0.001279
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WIA45345 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MLKAVFEVIDKTDEVSLKHCFEVADRTDEVSLKHCFEVVDETDEVSLKHCFEVADRTDEVSLKHCFEVADRTDEVSLKHCFEVVDETDEVSLKHCFEVVDETDEVSLKHCFEVADRTDEVSNHTYGKVKLTWFEEIFEEYHTKKPCSSR

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=ODS73_09185&oldid=190430"