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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN000276000
- symbol?: uvrB_1
- synonym:
- description?: TOTE conflict system archaeo-eukaryotic primase domain-containing protein
- TOTE conflict system archaeo-eukaryotic primase domain-containing protein
- RNA helicase
- DEAD/DEAH box helicase
- DEAD/DEAH box helicase family protein
- DNA/RNA helicase (DEAD/DEAH box family)
- DNA or RNA helicases of superfamily II
- helicase
- UvrABC system protein B
- DEAD/DEAH box helicase, putative
- putative helicase
- putative type III restriction endonuclease
- pseudogene
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 256524..1872120
- occurrence?: in 58% of 43 strains
⊟Orthologs[edit | edit source]
(19A)
SP49:
—
(1)
SPN032672:
—
(3)
SPN034156:
—
(3)
SPN034183:
—
(3)
SPN994038:
—
(3)
SPN994039:
—
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
D39 -MSTGKYIGEGFDLPQLDTLILAAPFSWKNNLIQYSGRIHRNYKDKSLVRIFDYVDIHVP
D39V -MSTGKYIGEGFDLPQLDTLILAAPFSWKNNLIQYSGRIHRNYKDKSLVRIFDYVDIHVP
Hungary19A-6 MLFTGKYIGEGFDLPQLDTLILAAPFSWKNNLIQYAGRIHRNYKDKSLVRIFDYVDIHVP
EF3030 -MFTGKYIGEGFDLPQLDTLILAAPFSWKNNLIQYAGRIHRNYKDKSLVRIFDYVDIHVP
: ********************************:************************
D39 YLEKMFQKRQVAYRKMDYRAIEGEEKQFVYVDSRYEKVLREDLAGERQECLLILPYVHQT
D39V YLEKMFQKRQVAYRKMDYRAIEGEEKQFVYVDSRYEKVLREDLAGERQECLLILPYVHQT
Hungary19A-6 YLEKMFQKRQVAYRKMDYRAIEGEEKQFVYVDSRYEKVLREDLAGERQECMLILPYVHQT
EF3030 YLEKMFQKRQVAYRKMDYRAIEGEEKQFVYVDSRYEKVLREDLAGERQECMLILPYVHQT
**************************************************:*********
D39 KLMNFLKEFRISQIEICIPETVANKAWLDQLKSQKIKVSFTQSKIVTPILLVNKTIVWYG
D39V KLMNFLKEFRISQIEICIPETVANKAWLDQLKSQKIKVSFTQSKIVTPILLVNKTIVWYG
Hungary19A-6 KLMNFLKEFRISQIEICIPETVANKAWLDQLKSQKIKVSFTQSKIVTPILLVNKTIVWYG
EF3030 KLMNFLKEFRISQIEICIPETVANKAWLDQLKSQKIKVSFTQSKIVTPILLVNKTIVWYG
************************************************************
D39 AMPLLGKVDEMTILRLESASIVSELVAGLR
D39V AMPLLGKVDEMTILRLESASIVSELVAGLR
Hungary19A-6 AMPLLGKVDEMTILRLESASIVSELVAGLR
EF3030 AMPLLGKVDEMTILRLESASIVSELVAGLR
******************************