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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN001024000
- symbol?: yitU
- synonym:
- description?: Cof-type HAD-IIB family hydrolase
- Cof-type HAD-IIB family hydrolase
- Cof family protein
- putative haloacid dehalogenase-like hydrolase
- 5-amino-6-(5-phospho-D-ribitylamino)uracil
- haloacid dehalogenase
- 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YitU
- Cof-like hydrolase
- Conserved hypothetical protein
- HAD family hydrolase
- HAD hydrolase
- HAD hydrolase, IIB family protein
- Hydrolase (HAD superfamily)
- Hydrolase, HAD superfamily
- Predicted hydrolases of the HAD superfamily
- pseudogene
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 1200657..1201483
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MTKKIIAVDLDGTLLNSDSQISDFTKRTIKKVAEKGHQVIITTGRPYRMSKDFYRELGLD
D39 MTKKIIAVDLDGTLLNSDSQISDFTKKTIKKVAEKGHQVIITTGRPYRMSKDFYRELGLD
D39V MTKKIIAVDLDGTLLNSDSQISDFTKKTIKKVAEKGHQVIITTGRPYRMSKDFYRELGLD
Hungary19A-6 MTKKIIAVDLDGTLLNSDSQISDFTKRTIKKVAEKGHQVIITTGRPYRMSKDFYRELGLD
EF3030 MTKKIIAVDLDGTLLNSDSQISDFTKKTIKKVAEKGHQVIITTGRPYRMSKDFYRELGLD
**************************:*********************************
TIGR4 TPMINFNGSLTHLPDQVWDFEKCLTVDKKYLLDMVQRSEDIQADFIAGEYRKKFYITNPN
D39 TPMINFNGSLTHLPDQVWDFEKCLTVDKKYLLDMVQRSEDIQADFIAGEYRKKFYITNPN
D39V TPMINFNGSLTHLPDQVWDFEKCLTVDKKYLLDMVQRSEDIQADFIAGEYRKKFYITNPN
Hungary19A-6 TPMINFNGSLTHLPDQVWDFEKCLTVDKKYLLDMVQRSEDIQADFIAGEYRKKFYITNPN
EF3030 TPMINFNGSLTHLPDQVWDFEKCLTVDKKYLLDMVQRSEDIQADFIAGEYRKKFYITNPN
************************************************************
TIGR4 EEIANPKLFGVEAFQPEDQFQPELVTKDPNCILLQTRASDKYSLAKEMNAFYQHQLSINT
D39 EEIANPKLFGVEAFQPEDQFQPELVTKNPNCILLQTRASDKYALAKDMNAFYQHQLSINT
D39V EEIANPKLFGVEAFQPEDQFQPELVTKNPNCILLQTRASDKYALAKDMNAFYQHQLSINT
Hungary19A-6 EEIANPKLFGVEAFQPEDQFQPELVTKDPNCILLQTRASDKYALAKDMNAFYQHQLSINT
EF3030 EEIANPKLFGVEAFQPEDQFQPELVTKDPNCILLQTRASDKYALAKEMNAFYQHQLSINT
***************************:**************:***:*************
TIGR4 WGGPLNILECTPKGVNKAFALDYLLKIMNRDKKDLIAFGDEHNDTEMLAFAGKGYAMKNA
D39 WGGPLNILECTPKGVNKAFALDYLLKIMNRDKKDLIAFGDEHNDTEMLAFAGKGYAMKNA
D39V WGGPLNILECTPKGVNKAFALDYLLKIMNRDKKDLIAFGDEHNDTEMLAFAGKGYAMKNA
Hungary19A-6 WGGPLNILECTPKGVNKAFALDYLLKIMNRDKKDLIAFGDEHNDTEMLAFAGKGYAMKNA
EF3030 WGGPLNILECTPKGVNKAFALDYLLKIMNRDKKDLIAFGDEHNDTEMLAFAGKGYAMKNA
************************************************************
TIGR4 NPELLPYADEQISLTNDQDGVAKTLQDLFL
D39 NPELLPYADEQISLTNDQDGVAKTLQDLFL
D39V NPELLPYADEQISLTNDQDGVAKTLQDLFL
Hungary19A-6 NPELLPYADEQISLTNDQDGVAKTLQDLFL
EF3030 NPELLPYADEQISLTNDQDGVAKTLQDLFL
******************************