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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN001319000
- symbol?: rrgB
- synonym:
- description?: PI-1 pilus major pilin RrgB
- PI-1 pilus major pilin RrgB
- cell wall surface anchor family protein
- isopeptide-forming domain-containing fimbrial protein
- cell surface protein
- cell wall surface anchor protein
- LPXTG-motif cell wall anchor domain protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1649486..1652334
- occurrence?: in 28% of 43 strains
⊟Orthologs[edit | edit source]
(12F)
ASP0581:
—
(19F)
ATCC 49619:
—
(23F)
ATCC 700669:
—
(19F)
G54:
—
(1)
gamPNI0373:
—
(3)
HU-OH:
—
(14)
INV200:
—
(14)
JJA:
—
(19F)
MDRSPN001:
—
(3)
OXC141:
—
(1)
P1031:
—
(2)
R6:
—
(19A)
SP49:
—
(1)
SPN032672:
—
(3)
SPN034156:
—
(3)
SPN034183:
—
(3)
SPN994038:
—
(3)
SPN994039:
—
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| Hungary19A-6 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MKSINKFLTMLAALLLTASSLFSAATVFAAGTTTT-------SVTVHKLLATDGDMDKIA
Hungary19A-6 MKSINKFLTMLAALLLTASSLFSAATVFAADNVSTAPDAVTKTLTIHKLLLSEDDLKTWD
******************************...:* ::*:**** ::.*:..
TIGR4 NELETGNYAGNKVGVLPAN---AKEIAGVMFVWTNTNNEIIDENGQTLGVNIDPQTFKLS
Hungary19A-6 TNGPKG-YDGTQSSLKDLTGVVAEEIPNVYFELQKYN---LTDGKEKENLKDDSKWTTVH
.: .* * *.: .: . *:**..* * : * : :. :. .:: *.: .:
TIGR4 GAMPATAMKKLTEAEGAKFNTANLPAAKYKIYEIHSLSTYVGEDGATLTGSKAVPIEIEL
Hungary19A-6 GG--------LTTKDGLKIETSTLKGV-YRIREDRTKTTYVGPNGQVLTGSKAVPALVTL
*. ** :* *::*:.* .. *:* * :: :**** :* .******** : *
TIGR4 PL----NDVVDAHVYPKNTEAKPKIDKDFKGKANPDTPRVDKDTPVNHQVGDVVEYEIVT
Hungary19A-6 PLVNNNGTVIDAHVFPKNSYNKPVVDKRIADTLNYNDQN-------GLSIGTKIPYVVNT
** . *:****:***: ** :** : .. * : . . .:* : * : *
TIGR4 KIPALANYATANWSDRMTEGLAFNKGTVKVTVDDVALEAGDYALTEVATGFDLKLTDAGL
Hungary19A-6 TIPSNATFATSFWSDEMTEGLTYNE-DVTITLNNVAMDQADYEVTKGINGFNLKLTEAGL
.**: *.:**: ***.*****::*: *.:*:::**:: .** :*: .**:****:***
TIGR4 AKVNDQNAEKTVKITYSATLNDKAIVEVPESNDVTFNYGNNPDHGNTPKPNKPNENGDLT
Hungary19A-6 AKINGKDADQKIQITYSATLNSLAVADIPESNDITYHYGNHQDHGNTPKPTKPN-NGQIT
**:*.::*::.::********. *:.::*****:*::***: ********.*** **::*
TIGR4 LTKTWVDATGAPIPAGAEATFDLVNAQTG-KVVQTVTLTTDKNTVTVNGLDKNTEYKFVE
Hungary19A-6 VTKTW---DSQPAPEGVKATVQLVNAKTGEKVGAPVELSENNWTYTWSGLDNSIEYK-VE
:**** . * * *.:**.:****:** ** .* *: :: * * .***:. *** **
TIGR4 RSIKGYSADYQEITTAGEIAVKNWKDENPKPLDPTEPKVVTYGKKFVKVNDKDNRLAGAE
Hungary19A-6 EEYNGYSAEYT-VESKGKLGVKNWKDNNPAPINPEEPRVKTYGKKFVKVDQKDTRLENAQ
.. :****:* : : *::.******:** *::* **:* *********::**.** .*:
TIGR4 FVIANADNAGQYLARKADKVSQEEKQLVVTTKDALDRAVAAYNALTAQQQTQQEKEKVDK
Hungary19A-6 FVVKKAD-SNKYIAFKSTAQQAADEKAAATAKQKLDAAVAAYTNAADKQAAQA---LVDQ
**: :** :.:*:* *: . ::: ..*:*: ** *****. : :* :* **:
TIGR4 AQAAYNAAVIAANNAFEWVADKDNENVVKLVSDAQGRFEITGLLAGTYYLEETKQPAGYA
Hungary19A-6 AQQEYNVAYKEAKFGYVEVAGKDEAMV--LTSNTDGQFQISGLAAGTYKLEEIKAPEGFA
** **.* *: .: **.**: * *.*:::*:*:*:** **** *** * * *:*
TIGR4 LLTSRQKFEVTATSYSATGQG-IEYTAGSGKDDATKVVNKKITIPQTGGIGTIIFAVAGA
Hungary19A-6 KIDDVE-FVVGAGSWN---QGEFNYLKDVQKNDATKVVNKKITIPQTGGIGTIIFAVAGA
: . : * * * *:. ** ::* . *:****************************
TIGR4 AIMGIAVYAYVKNNKDEDQLA
Hungary19A-6 AIMGIAVYAYVKNNKDEDQLA
*********************