PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BM6001

serotype 19F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7465

serotype 1

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

⊟Summary

• pan ID^?: PNEUPAN001375000
• symbol^?: hsdR
• synonym:
• description^?: EcoAI/FtnUII family type I restriction enzme subunit R

  descriptions from strain specific annotations:

  • EcoAI/FtnUII family type I restriction enzme subunit R
  • type I restriction-modification system, R subunit
  • type I restriction-modification system R protein
  • Putative DNA repair helicase RadD
  • type I restriction endonuclease subunit R
  • restriction endonuclease subunit R
  • DEAD/DEAH box helicase
  • DEAD/DEAH box helicase family protein
  • EcoA type I restriction-modification enzyme R subunit
  • putative type-I restriction enzyme
  • type I restriction-modification system%2C R subunit
  • Type I restriction-modification system protein
  • Type I restriction-modification system restriction subunit R
  • type I site-specific restriction-modification system, R (Restriction) subunit
  • Type I site-specific restriction-modification system, R (restriction) subunit-like helicase
  • pseudogene
• strand^?: -
• coordinates^?: 1770060..1772397
• occurrence^?: in 93% of 43 strains

⊟Orthologs

(4)^?
TIGR4:
SP_RS02505 (hsdR)
(2)
D39:
SPD_RS02450 (hsdR)
(2)
D39V:
SPV_RS02445 (hsdR)
(19A)
Hungary19A-6:
SPH_RS02995 (hsdR)
(19F)
EF3030:
EF3030_RS02420 (hsdR)
(6B)^?
670-6B:
SP670_RS02910 (hsdR)
(6A)
6A-10:
HKM25_RS02500 (hsdR)
(5)
70585:
SP70585_RS02785 (hsdR)
(19F)
A026:
T308_RS02465 (hsdR)
(3)
A66:
—
(11A)
AP200:
SPAP_RS02530
(12F)
ASP0581:
EL334_RS02635 (hsdR)
(19F)
ATCC 49619:
EL263_RS02625 (hsdR)
(23F)
ATCC 700669:
SPN23F_RS02370 (hsdR)
(19F)
BM6001:
ODS73_RS02855 (hsdR)
(1)
BVJ1JL:
JN057_RS02600 (hsdR)
(14)
CGSP14:
SPCG_RS02535 (hsdR)
(19F)
G54:
SPG_RS02345
(1)
gamPNI0373:
HMPREF1038_RS02670 (hsdR)
(3)
HU-OH:
EL271_RS02380 (hsdR)
(19A)
Hu15:
SPNHU15_RS02705 (hsdR)
(19A)
Hu17:
SPNHU17_RS02630 (hsdR)
(1)
INV104:
INV104_RS14050 (hsdR)
(14)
INV200:
SPNINV200_RS02400 (hsdR)
(14)
JJA:
SPJ_RS02410 (hsdR)
(19F)
MDRSPN001:
MDRSPN_RS02350 (hsdR)
(1)
NCTC7465:
AT689_RS11115 (hsdR)
(2)
NCTC7466:
DQM66_RS02450 (hsdR)
(4)
NU83127:
EL277_RS02595 (hsdR)
(3)
OXC141:
SPNOXC_RS02565 (hsdR)
(1)
P1031:
SPP_RS02620 (hsdR)
(2)
R6:
SPR_RS02310 (hsdR)
(19A)
SP49:
BMJ42_RS03090 (hsdR)
(1)
SPN032672:
—
(3)
SPN034156:
SPN034156_RS08505 (hsdR)
(3)
SPN034183:
SPN034183_RS02580 (hsdR)
(3)
SPN994038:
SPN994038_RS02500 (hsdR)
(3)
SPN994039:
SPN994039_RS02500 (hsdR)
(3)
SPNA45:
—
(19F)
ST556:
MYY_RS02935 (hsdR)
(19F)
Taiwan19F-14:
SPT_RS02715 (hsdR)
(19A)
TCH8431/19A:
HMPREF0837_RS03890 (hsdR)
(4)
Xen35:
CXP32_RS02560 (hsdR)

⊟Genome Viewer

TIGR4
D39
D39V
Hungary19A-6
EF3030

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
  
  
  TIGR4           MVEFIKSKKEMSEEDIKANFITPAIVSKGWKNGEHIAYEEYFTDGRIEVRGDKARRKEGK
  D39             MVEFIKSKKEMSEEDIKANFITPAIVSKGWKNGEHIAYEEYFTDGRIEVRGDKARRKEGK
  D39V            MVEFIKSKKEMSEEDIKANFITPAIVSKGWKNGEHIAYEEYFTDGRIEVRGDKARRKEGK
  Hungary19A-6    MVEFIKSKKEMSEEDIKANFITPAIVSKGWKNGEHIAYEEYFTDGRIEVRGDKARRKEGK
  EF3030          MVEFIKSKKEMSEEDIKANFITPAIVSKGWKNGEHIAYEEYFTDGRIEVRGDKARRKEGK
                  ************************************************************
  
  TIGR4           KSDYSLYYQFGTRIAIVEAKDNKHSVRAGLQQAIEYGEILDVPFVYSSNGDGFIEHDRIT
  D39             KSDYSLYYQFGTRIAIVEAKDNKHSVRAGLQQAIEYGEILDVPFVYSSNGDGFIEHDRIT
  D39V            KSDYSLYYQFGTRIAIVEAKDNKHSVRAGLQQAIEYGEILDVPFVYSSNGDGFIEHDRIT
  Hungary19A-6    KSDYSLYYQFGTRIAIVEAKDNKHSVRAGLQQAIEYGEILDVPFVYSSNGDGFIEHDRIT
  EF3030          KSDYSLYYQFGTRIAIVEAKDNKHSVRAGLQQAIEYGEILDVPFVYSSNGDGFIEHDRIT
                  ************************************************************
  
  TIGR4           REERELELDEFPTREELFSRMTKEKGLTYEITEAISTPYYTDAFSMKTPRYYQQIAINRT
  D39             REERELELDEFPTREELFSRMTKEKGLTYEITEAISTPYYTDAFSMKTPRYYQQIAINRT
  D39V            REERELELDEFPTREELFSRMTKEKGLTYEITEAISTPYYTDAFSMKTPRYYQQIAINRT
  Hungary19A-6    REERELELDEFPTREELFSRMTKEKGLTYEITEAISTPYYTDAFSMKTPRYYQQIAINRT
  EF3030          REERELELDEFPTREELFSRMTKEKGLTYEITEAISTPYYTDAFSMKTPRYYQQIAINRT
                  ************************************************************
  
  TIGR4           IETVARGQKRVMFVMATGTGKTFMAFQIIHRLRKAGLAKRVLFLADRNILVDQTMAEDFR
  D39             IETVARGQKRVMFVMATGTGKTFMAFQIIHRLRKAGLAKRVLFLADRNILVDQTMAEDFR
  D39V            IETVARGQKRVMFVMATGTGKTFMAFQIIHRLRKAGLAKRVLFLADRNILVDQTMAEDFR
  Hungary19A-6    IETVARGQKRVMFVMATGTGKTFMAFQIIHRLRKAGLAKRVLFLADRNILVDQTMAEDFR
  EF3030          IETVARGQKRVMFVMATGTGKTFMAFQIIHRLRKAGLAKRVLFLADRNILVDQTMAEDFR
                  ************************************************************
  
  TIGR4           PFEKVMTKITPKLLTAPEKLNSFEIYLGLYQQLTGEDGTETHYQKFDKDFFDLIVIDEAH
  D39             PFEKVMTKITPKLLTAPEKLNSFEIYLGLYQQLTGEDGTETHYQKFDKDFFDLIVIDEAH
  D39V            PFEKVMTKITPKLLTAPEKLNSFEIYLGLYQQLTGEDGTETHYQKFDKDFFDLIVIDEAH
  Hungary19A-6    PFEKVMTKITPKLLTAPEKLNSFEIYLGLYQQLTGEDGTETHYQKFDKDFFDLIVIDEAH
  EF3030          PFEKVMTKITPKLLTAPEKLNSFEIYLGLYQQLTGEDGTETHYQKFDKDFFDLIVIDEAH
                  ************************************************************
  
  TIGR4           RGSAKENSNWRKVIDYFSSATQIGMTATLKETKNASNTEYFGEPIYTYSLKQGIEDGFLA
  D39             RGSAKENSNWRKIIDYFSSATQIGMTATPKETKNASNTEYFGEPIYTYSLKQGIEDGFLA
  D39V            RGSAKENSNWRKIIDYFSSATQIGMTATPKETKNASNTEYFGEPIYTYSLKQGIEDGFLA
  Hungary19A-6    RGSAKEDSNWRKVIDYFSSATQIGMTATPKETKNASNTEYFGEPIYTYSLKQGIEDGFLA
  EF3030          RGSAKEDSNWRKVIDYFSSATQIGMTATPKETKNASNTEYFGEPIYTYSLKQGIEDGFLA
                  ******:*****:*************** *******************************
  
  TIGR4           PYRVMRVNLDVDVDGYRPETGKVDANGQLIEDRYYGRKDFDKTIVIDDRTQRVAKFVSDY
  D39             PYRVMRVNLDVDVDGYRPETGKVDANGQLIEDRYYGRKDFDKTIVIDDRTQRVAKFVSDY
  D39V            PYRVMRVNLDVDVDGYRPETGKVDANGQLIEDRYYGRKDFDKTIVIDDRTQRVAKFVSDY
  Hungary19A-6    PYRVMRVNLDVDVDGYRPETGKVDANGQLIEDRYYGRKDFDKTIVIDDRTQRVAKFVSDY
  EF3030          PYRVMRVNLDVDVDGYRPETGKVDANGQLIEDRYYGRKDFDKTIVIDDRTQRVAKFVSDY
                  ************************************************************
  
  TIGR4           MKQNNARFDKTIVFCVDIDHAERMRAALVKENLDLVQEDYRYVMQVTGDNAEGKAQLDNF
  D39             MKQNNARFDKTIVFCVDIDHAERMRAALVKENLDLVQEDYRYVMQVTGDNAEGKAQLDNF
  D39V            MKQNNARFDKTIVFCVDIDHAERMRAALVKENLDLVQEDYRYVMQVTGDNAEGKAQLDNF
  Hungary19A-6    MKQNNARFDKTIVFCVDIDHAERMRAALVKENLDLVQEDYRYVMQVTGDNAEGKAQLDNF
  EF3030          MKQNNARFDKTIVFCVDIDHAERMRAALVKENLDLVQEDYRYVMQVTGDNAEGKAQLDNF
                  ************************************************************
  
  TIGR4           MDVNSNFPAIVTTSKLLTTGVNAKTCRLIVLDSNIQSMTEFKQIIGRGTRLYPQKGKEFF
  D39             MDVNSNFPAIVTTSKLLTTGVNAKTCRLIVLDSNIQSMTEFKQIIGRGTRLYPQKGKEFF
  D39V            MDVNSNFPAIVTTSKLLTTGVNAKTCRLIVLDSNIQSMTEFKQIIGRGTRLYPQKGKEFF
  Hungary19A-6    MDVNSNFPAIVTTSKLLTTGVNAKTCRLIVLDSNIQSMTEFKQIIGRGTRLYPQKGKEFF
  EF3030          MDVNSNFPAIVTTSKLLTTGVNAKTCRLIVLDSNIQSMTEFKQIIGRGTRLYPQKGKEFF
                  ************************************************************
  
  TIGR4           TIIDFRNVTNLFADPDFDGDPVKVLETGAKTVSGSTPGFVDEEGDPVEKYIVTDKQVTIL
  D39             TIIDFRNVTNLFADPDFDGDPVKVLETGAKTVSGSTPGFVSEEGDPVEKYIVTDKQVTIL
  D39V            TIIDFRNVTNLFADPDFDGDPVKVLETGAKTVSGSTPGFVSEEGDPVEKYIVTDKQVTIL
  Hungary19A-6    TIIDFRNVTNLFADPDFDGEPVKVLETGAKTVSGSTPGFVGEEGDPVEKYIVTDKQVTIL
  EF3030          TIIDFRNVTNLFADPDFDGEPVKVLETGAKTVSGSTPGFVGEEGDPVEKYIVTDKQVTIL
                  *******************:********************.*******************
  
  TIGR4           NSTVQVLDENGKLITESLTDYTRKNILGSYATLNDFITVWHTADKKKLILDELYKKGVYL
  D39             NSTVQVLDENGKLITESLTDYTRKNILGSYATLNDFITVWHTADKKKLILDELYKKGVYL
  D39V            NSTVQVLDENGKLITESLTDYTRKNILGSYATLNDFITVWHTADKKKLILDELYKKGVYL
  Hungary19A-6    NSTVQVLDENGKLITESLTDYTRKNILGSYATLNDFITVWHTADKKKLILDELYKKGVYL
  EF3030          NSTVQVLDENGKLITESLTDYTRKNILGSYATLNDFITVWHTADKKKLILDELYKKGVYL
                  ************************************************************
  
  TIGR4           DAIRESEGISEQEIDDFDLLLKLAYGQKELTKTERINKLKQSGYLYKYSEEARAVLEILL
  D39             DAIRESEGISEQEIDDFDLLLKLAYGQKELTKTERINKLKQSGYLYKYSEEARAVLEILL
  D39V            DAIRESEGISEQEIDDFDLLLKLAYGQKELTKTERINKLKQSGYLYKYSEEARAVLEILL
  Hungary19A-6    DAIRESEGISEQEIDDFDLLLKLAYGQKELTKTERINKLKQSGYLYKYSEEARAVLEILL
  EF3030          DAIRESEGISEQEIDDFDLLLKLAYGQKELTKTERINKLKQSGYLYKYSEEARAVLEILL
                  ************************************************************
  
  TIGR4           NKYMDKGIGELESIETLKLPEFQIYGGTFKIINTYFGDKKRYLQAIKELEQELFTVA
  D39             NKYMDKGIGELESIETLKLPEFQIYGGTFKIINTYFGDKKRYLQAIKELEQELFTVA
  D39V            NKYMDKGIGELESIETLKLPEFQIYGGTFKIINTYFGDKKRYLQAIKELEQELFTVA
  Hungary19A-6    NKYMDKGIGELESIETLKLPEFQIYGGTFKIINTYFGDKKRYLQAIKELEQELFTVA
  EF3030          NKYMDKGIGELESIETLKLPEFQIYGGTFKIINTYFGDKKRYLQAIKELEQELFTVA
                  *********************************************************