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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 17-DEC-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae Taiwan19F-14
  • locus tag: SPT_RS02715 [old locus tag: SPT_0545 ]
  • pan locus tag?: PNEUPAN001375000
  • symbol: hsdR
  • pan gene symbol?: hsdR
  • synonym:
  • product: EcoAI/FtnUII family type I restriction enzme subunit R

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPT_RS02715 [old locus tag: SPT_0545 ]
  • symbol: hsdR
  • product: EcoAI/FtnUII family type I restriction enzme subunit R
  • replicon: chromosome
  • strand: -
  • coordinates: 513836..516169
  • length: 2334
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    ATGGTTGAGTTTATAAAGTCTAAGAAAGAAATGAGTGAGGAGGATATTAAAGCAAATTTC
    ATCACTCCTGCTATTGTATCCAAAGGATGGAAAAATGGTGAGCATATCGCTTACGAAGAA
    TACTTCACTGATGGTCGAATTGAGGTTAGAGGAGATAAGGCTCGTCGTAAAGAAGGAAAA
    AAATCAGACTATTCACTGTATTACCAATTTGGAACTCGAATTGCAATTGTTGAGGCAAAG
    GATAATAAACACAGCGTTCGAGCAGGATTACAACAAGCTATTGAATATGGAGAGATTTTA
    GATGTTCCATTTGTTTATTCTTCAAATGGTGATGGCTTTATTGAACACGACCGTATCACG
    AGAGAAGAACGTGAGCTGGAGTTAGACGAATTCCCTACTCGTGAAGAATTATTTTCTCGT
    ATGACGAAGGAAAAAGGATTGACGTACGAAATTACAGAAGCTATCTCAACTCCATACTAT
    ACAGACGCCTTCTCAATGAAAACGCCACGCTATTATCAGCAAATAGCTATCAACCGTACT
    ATTGAAACAGTTGCCAGAGGACAAAAACGAGTAATGTTTGTGATGGCAACAGGAACGGGG
    AAAACGTTCATGGCTTTTCAAATTATTCATCGCCTTCGAAAAGCTGGTTTGGCTAAACGA
    GTTTTATTCTTAGCGGATAGAAACATCTTAGTAGACCAAACGATGGCTGAAGACTTTAAG
    CCATTCGAAAAGGTAATGACGAAAATTACACCAAAACTTTTGACTGCTCCTGAAAAATTA
    AATTCTTTTGAAATTTATCTAGGGCTTTATCAGCAACTAACTGGTGAAGATGGAACTGAA
    ACACATTATCAAAAATTTGACAAAGACTTCTTTGATTTAATCGTAATTGATGAAGCGCAC
    CGTGGTTCAGCTAAGGAAAACAGTAACTGGCGTAAGATAATTGATTATTTCAGTTCTGCG
    ACACAGATTGGGATGACCGCTACTCCTAAAGAAACCAAGAATGCTTCCAATACGGAATAC
    TTTGGTGAGCCAATCTATACTTATAGTTTAAAACAGGGAATCGAGGATGGTTTTTTGGCT
    CCATATCGTGTTATGAGGGTTAATTTAGATGTGGATGTGGATGGTTATCGTCCAGAAACT
    GGAAAAGTTGATACTAACGGACAATTAATAGAAGATAGGTACTACGGCAGGAAAGATTTT
    GATAAAACCATTGTCATTGATGATAGAACGCAAAGAGTTGCCAAGTTTGTTTCTGATTAT
    ATGAAGCAAAGCAATGCACGATTTGATAAAACAATTGTTTTTTGTGTTGATATTGACCAT
    GCCGAGCGAATGCGTGCTGCACTTGTAAAAGAGAATCTAGACTTAGTCCAAGAAGACTAT
    CGTTATGTCATGCAAGTAACTGGTGACAACGCTGAAGGAAAAGCTCAACTGGATAACTTT
    ATGGATGTCAATTCTAATTTTCCCGCTATTGTAACAACGTCTAAATTATTAACGACAGGA
    GTTAATGCTAAAACATGTCGTTTGATTGTTTTAGACTCTAATATCCAATCCATGACTGAA
    TTTAAACAAATTATTGGTCGTGGCACACGTCTTTATCCTCAAAAGGGGAAAGAATTTTTT
    ACGATTATTGATTTTCGAAATGTTACCAATTTGTTTGCTGACCCTGATTTTGATGGTGAT
    CCTGTGAAGGTGCTGGAAACAGGTGCGAAAACAGTCAGTGGTTCTACGCCCGGTTTCGTA
    GATGAGGAAGGTGACCCAGTAGAAAAATATATCGTTACAGACAAGCAGGTTACCATTCTT
    AATTCTACTGTTCAAGTATTAGATGAAAACGGGAAACTGATTACCGAAAGCCTGACCGAC
    TACACTCGGAAGAATATCTTAGGTAGCTACGCCACTTTGAACGATTTTATCACAGTTTGG
    CATACGGCGGATAAAAAGAAGCTTATCTTAGACGAACTTTATAAAAAAGGAGTTTATCTA
    GATGCTATTCGAGAGTCGGAGGGAATATCAGAACAAGAAATCGATGATTTTGATTTACTC
    CTAAAACTTGCCTATGGTCAAAAAGAATTAACCAAAACGGAACGTATCAATAAACTCAAA
    CAAAGCGGATATTTATATAAATATAGTGAGGAAGCGCGTGCTGTTTTGGAAATTTTACTG
    AACAAATACATGGATAAAGGTATTGGAGAACTCGAAAGCATTGAAACATTAAAACTTCCA
    GAATTTCAGATATATGGTGGAACCTTCAAAATCATCAATACTTATTTTGGAGATAAAAAA
    CGATATTTACAAGCAATTAAAGAATTGGAGCAAGAGCTATTTACAGTAGCTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2280
    2334

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPT_RS02715 [old locus tag: SPT_0545 ]
  • symbol: HsdR
  • description: EcoAI/FtnUII family type I restriction enzme subunit R
  • length: 777
  • theoretical pI: 5.16342
  • theoretical MW: 89293.7
  • GRAVY: -0.494981

⊟Function[edit | edit source]

  • TIGRFAM:
    DNA phosphorothioation system restriction enzyme (TIGR04095; HMM-score: 60.6)
    and 4 more
    Genetic information processing DNA metabolism DNA replication, recombination, and repair excinuclease ABC subunit B (TIGR00631; EC 3.1.25.-; HMM-score: 17.5)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair ATP-dependent DNA helicase, RecQ family (TIGR00614; EC 3.6.4.12; HMM-score: 15.2)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair ATP-dependent DNA helicase RecG (TIGR00643; EC 3.6.4.12; HMM-score: 14.9)
    arsenical pump-driving ATPase (TIGR04291; EC 3.6.1.-; HMM-score: 13.5)
  • TheSEED: see SPT_0545
  • PFAM:
    P-loop_NTPase (CL0023) ResIII; Type III restriction enzyme, res subunit (PF04851; HMM-score: 144.9)
    and 12 more
    no clan defined EcoEI_R_C; EcoEI R protein C-terminal (PF08463; HMM-score: 80.5)
    P-loop_NTPase (CL0023) SWI2_SNF2; SWI2/SNF2 ATPase (PF18766; HMM-score: 73.8)
    DEAD; DEAD/DEAH box helicase (PF00270; HMM-score: 35.8)
    Helicase_C; Helicase conserved C-terminal domain (PF00271; HMM-score: 25.9)
    PDDEXK (CL0236) HSDR_N_2; Type I restriction enzyme R protein N terminus (HSDR_N) (PF13588; HMM-score: 19.6)
    P-loop_NTPase (CL0023) DUF2075; Schlafen group 3, DNA/RNA helicase domain (PF09848; HMM-score: 19)
    PDDEXK (CL0236) HSDR_N; Type I restriction enzyme R protein N terminus (HSDR_N) (PF04313; HMM-score: 18.5)
    P-loop_NTPase (CL0023) AAA_22; AAA domain (PF13401; HMM-score: 18.3)
    AAA_11; AAA domain (PF13086; HMM-score: 16.3)
    AAA_30; AAA domain (PF13604; HMM-score: 15.7)
    AAA_7; P-loop containing dynein motor region (PF12775; HMM-score: 15.5)
    PIF1; PIF1-like helicase (PF05970; HMM-score: 14.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.7426
    • Cytoplasmic Membrane Score: 0.0765
    • Cell wall & surface Score: 0.0109
    • Extracellular Score: 0.1699
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.009053
    • TAT(Tat/SPI): 0.000814
    • LIPO(Sec/SPII): 0.002316
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000229085 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MVEFIKSKKEMSEEDIKANFITPAIVSKGWKNGEHIAYEEYFTDGRIEVRGDKARRKEGKKSDYSLYYQFGTRIAIVEAKDNKHSVRAGLQQAIEYGEILDVPFVYSSNGDGFIEHDRITREERELELDEFPTREELFSRMTKEKGLTYEITEAISTPYYTDAFSMKTPRYYQQIAINRTIETVARGQKRVMFVMATGTGKTFMAFQIIHRLRKAGLAKRVLFLADRNILVDQTMAEDFKPFEKVMTKITPKLLTAPEKLNSFEIYLGLYQQLTGEDGTETHYQKFDKDFFDLIVIDEAHRGSAKENSNWRKIIDYFSSATQIGMTATPKETKNASNTEYFGEPIYTYSLKQGIEDGFLAPYRVMRVNLDVDVDGYRPETGKVDTNGQLIEDRYYGRKDFDKTIVIDDRTQRVAKFVSDYMKQSNARFDKTIVFCVDIDHAERMRAALVKENLDLVQEDYRYVMQVTGDNAEGKAQLDNFMDVNSNFPAIVTTSKLLTTGVNAKTCRLIVLDSNIQSMTEFKQIIGRGTRLYPQKGKEFFTIIDFRNVTNLFADPDFDGDPVKVLETGAKTVSGSTPGFVDEEGDPVEKYIVTDKQVTILNSTVQVLDENGKLITESLTDYTRKNILGSYATLNDFITVWHTADKKKLILDELYKKGVYLDAIRESEGISEQEIDDFDLLLKLAYGQKELTKTERINKLKQSGYLYKYSEEARAVLEILLNKYMDKGIGELESIETLKLPEFQIYGGTFKIINTYFGDKKRYLQAIKELEQELFTVA

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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