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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN001609000
- symbol?: —
- synonym:
- description?: ABC transporter permease
- ABC transporter permease
- Putative membrane spanning protein
- ABC transporter permease subunit
- membrane protein, putative
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2049245..2049958
- occurrence?: in 35% of 43 strains
⊟Orthologs[edit | edit source]
670-6B:
—
6A-10:
—
70585:
—
ASP0581:
—
ATCC 49619:
—
ATCC 700669:
—
G54:
—
gamPNI0373:
—
HU-OH:
—
SPN034183:
—
SPN994038:
—
SPN994039:
—
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MLKRFLALVWLRCQIILSNKSILLQVLVPFAFTYFYKYLMETQGKVNDQQALVLLMMCLP
D39 MLKRFLALVWLRCQIILSNKSILLQVLVPFAFTYFYKYLMETQGKVNDQQALVLLMMCLP
D39V MLKRFLALVWLRCQIILSNKSILLQVLVPFAFTYFYKYLMETQGKVNDQQALVLLMMCLP
EF3030 MLKRFLALVWLRCQIILSNKSILLQVLVPFAFTYFYKYLMETQGKVNDQQALVLLMMCLP
************************************************************
TIGR4 FSFSLAVGSPITIILSEEKEKYNLQTLLLSGVKGSEYILSTMFLPFLLTFVIMGTTPLIL
D39 FSLALAVGSPITIILSEEKEKYNLQTLLLSGVKGSEYILSTMFLPFLLTFVIMGTTPLIL
D39V FSLALAVGSPITIILSEEKEKYNLQTLLLSGVKGSEYILSTMFLPFLLTFVIMGTTPLIL
EF3030 FSLALAVGSPITIILSEEKEKYNLQTLLLSGVKGSEYILSTMFLPFLLTFVIMGTTPLIL
**::********************************************************
TIGR4 GVTIVHTFNYITIVLLTSLSIILFYLLIGLTAKSQVVAQVISLPAMILVAFLPMLSGLDK
D39 GVTIVHTFNYITIVLLTSLSIILFYLLIGLTAKSQVVAQVISLPAMILVAFLPMLSSLDK
D39V GVTIVHTFNYITIVLLTSLSIILFYLLIGLTAKSQVVAQVISLPAMILVAFLPMLSSLDK
EF3030 GVTIVHTFNYITIVLLTSLSIILFYLLIGLTAKSQVVAQVISLPAMILVAFLPMLSGLDK
********************************************************.***
TIGR4 TVAKITDYSFMGLFTKFFTKWEEFSWNKTLIPNLTLLIWIVLLLTLITITIRKKKIS
D39 TVAKITDYSFMGLFTKFFTKWEGFSWNETLIPNLTLLIWIVLLLTLITITIRKKKIS
D39V TVAKITDYSFMGLFTKFFTKWEGFSWNETLIPNLTLLIWIVLLLTLITITIRKKKIS
EF3030 TVAKITDYSFMGLFTKFFTKWEGFSWNETLIPNLTLLIWIVLLLTLITITIRKKKIS
********************** ****:*****************************