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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN001624000
- symbol?: glnH3
- synonym:
- description?: cysteine ABC transporter substrate-binding protein
- cysteine ABC transporter substrate-binding protein
- transporter substrate-binding domain-containing protein
- putative periplasmic solute-binding transport protein
- ABC transporter glutamine-binding protein GlnH
- amino acid ABC transporter substrate-binding protein
- putative periplasmic solute-binding transport protein (pseudogene)
- ABC-type amino acid transport/signal transduction system, periplasmic component/domain
- ABC transporter substrate binding lipoprotein-amino acid transport
- ABC-type amino acid transport/signal transduction system, periplasmic component/domain protein
- ABC transporter, substrate binding protein
- ABC transporter substrate-binding protein
- ABC transporter substrate-binding protein - unknown substrate, truncation
- ABC-type amino acid transport/signal transduction systems, periplasmic component/domain protein
- amino acid (glutamine) ABC transporter substrate binding protein
- Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1)
- polar amino acid ABC uptake transporter substrate binding protein
- putative amino-acid transporter periplasmic solute-binding protein
- pseudogene
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 2067865..2068459
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 ------------------------------------------------------------
D39 ------------------------------------------------------------
D39V ------------------------------------------------------------
Hungary19A-6 MKLFKPLLTVLALAFALIFITACSSGGNAGSSSGKTTAKARTIDEIKKSGELRIAVFGDK
EF3030 MKLFKPLLTVLALAFALIFITACSSGGNAGSSSGKTTAKARTIDEIKKSGELRIAVFGDK
TIGR4 ----------------MELGNQLAQDLGVKVKYISVDAANRAEYLISNKVDITLANFTVT
D39 ----------------MELGNQLAQDLGVKVKYISVDADNRAEYLISNKVDITLANFTVT
D39V ----------------MELGNQLAQDLGVKVKYISVDADNRAEYLISNKVDITLANFTVT
Hungary19A-6 KPFGYVDNDGSYQGYDIELGNQLAQDLGVKVKYISVDAANRAEYLISNKVDITLANFTVT
EF3030 KPFGYVDNDGSYQGYDIELGNQLAQDLGVKVKYISVDAANRAEYLISNKVDITLANFTVT
:********************* *********************
TIGR4 DERKKQVDFALPYMKVSLGVVSPKTGLITDVKQLEGKTLIVTKGTTAETYFEKNHPEIKL
D39 DERKKQVDFALPYMKVSLGVVSPKTGLITDVKQLEGKTLIVTKGTTAETYFEKNHPEIKL
D39V DERKKQVDFALPYMKVSLGVVSPKTGLITDVKQLEGKTLIVTKGTTAETYFEKNHPEIKL
Hungary19A-6 DERKKQVDFALPYMKVSLGVVSPKTGLITDVKQLEGKTLIVTKGTTAETYFEKNHPEIKL
EF3030 DERKKQVDFALPYMKVSLGVVSPKTGLITDVKQLEGKTLIVTKGTTAETYFEKNHPEIKL
************************************************************
TIGR4 QKYDQYSDSYQALLDGRGDAFSTDNTEVLAWALENKGFEVGITSLGDPDTIAAAVQKGNQ
D39 QKYDQYSDSYQALLDGRGDAFSTDNTEVLAWALENKGFEVGITSLGDPDTIAAAVQKGNQ
D39V QKYDQYSDSYQALLDGRGDAFSTDNTEVLAWALENKGFEVGITSLGDPDTIAAAVQKGNQ
Hungary19A-6 QKYDQYSDSYQALLDGRGDAFSTDNTEVLAWALENKGFEVGITSLGDPDTIAAAVQKGNQ
EF3030 QKYDQYSDSYQALLDGRGDAFSTDNTEVLAWALENKGFEVGITSLGDPDTIAAAVQKGNQ
************************************************************
TIGR4 ELLDFINKDIEKLGKENFFHKAYEKTLHPTYGDAAKADDLVVEGGKVD
D39 ELLDFINKDIEKLGKENFFHKAYEKTLHPTYGDAAKADDLVVEGGH--
D39V ELLDFINKDIEKLGKENFFHKAYEKTLHPTYGDAAKADDLVVEGGH--
Hungary19A-6 ELLDFINKDIEKLGKENFFHKAYEKTLHPTYGDAAKADDLVVEGGKVD
EF3030 ELLDFINKDIEKLGKENFFHKAYEKTLHPTYGDAAKADDLVVEGGH--
*********************************************: