PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BM6001

serotype 19F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7465

serotype 1

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

⊟Summary

• pan ID^?: PNEUPAN001634000
• symbol^?: lysS
• synonym:
• description^?: lysine--tRNA ligase

  descriptions from strain specific annotations:

  • lysine--tRNA ligase
  • lysyl-tRNA synthetase
  • lysyl-tRNA synthetase (classII)
  • Class II lysyl-tRNA synthetase
  • Lysyl-tRNA synthetase (lysine--tRNA ligase) (LYSRS)
• strand^?: +
• coordinates^?: 2074649..2076139
• occurrence^?: in 100% of 43 strains

⊟Orthologs

(4)^?
TIGR4:
SP_RS03490 (lysS)
(2)
D39:
SPD_RS03335 (lysS)
(2)
D39V:
SPV_RS03330 (lysS)
(19A)
Hungary19A-6:
SPH_RS03870 (lysS)
(19F)
EF3030:
EF3030_RS03335 (lysS)
(6B)^?
670-6B:
SP670_RS03805 (lysS)
(6A)
6A-10:
HKM25_RS03360 (lysS)
(5)
70585:
SP70585_RS03740 (lysS)
(19F)
A026:
T308_RS03370 (lysS)
(3)
A66:
A66_RS03225 (lysS)
(11A)
AP200:
SPAP_RS03425 (lysS)
(12F)
ASP0581:
EL334_RS03515 (lysS)
(19F)
ATCC 49619:
EL263_RS03470 (lysS)
(23F)
ATCC 700669:
SPN23F_RS03255 (lysS)
(19F)
BM6001:
ODS73_RS03775 (lysS)
(1)
BVJ1JL:
JN057_RS03475 (lysS)
(14)
CGSP14:
SPCG_RS03475 (lysS)
(19F)
G54:
SPG_RS03265 (lysS)
(1)
gamPNI0373:
HMPREF1038_RS03585 (lysS)
(3)
HU-OH:
EL271_RS03260 (lysS)
(19A)
Hu15:
SPNHU15_RS03535 (lysS)
(19A)
Hu17:
SPNHU17_RS03475 (lysS)
(1)
INV104:
INV104_RS03480 (lysS)
(14)
INV200:
SPNINV200_RS03365 (lysS)
(14)
JJA:
SPJ_RS03270 (lysS)
(19F)
MDRSPN001:
MDRSPN_RS02955 (lysS)
(1)
NCTC7465:
AT689_RS10220 (lysS)
(2)
NCTC7466:
DQM66_RS03335 (lysS)
(4)
NU83127:
EL277_RS03585 (lysS)
(3)
OXC141:
SPNOXC_RS03450 (lysS)
(1)
P1031:
SPP_RS03525 (lysS)
(2)
R6:
SPR_RS03155 (lysS)
(19A)
SP49:
BMJ42_RS04035 (lysS)
(1)
SPN032672:
SPN032672_RS09740 (lysS)
(3)
SPN034156:
SPN034156_RS09375 (lysS)
(3)
SPN034183:
SPN034183_RS03465 (lysS)
(3)
SPN994038:
SPN994038_RS03385 (lysS)
(3)
SPN994039:
SPN994039_RS03385 (lysS)
(3)
SPNA45:
SPNA45_RS05870 (lysS)
(19F)
ST556:
MYY_RS03850 (lysS)
(19F)
Taiwan19F-14:
SPT_RS03635 (lysS)
(19A)
TCH8431/19A:
HMPREF0837_RS04800 (lysS)
(4)
Xen35:
CXP32_RS03550 (lysS)

⊟Genome Viewer

TIGR4
D39
D39V
Hungary19A-6
EF3030

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
  
  
  TIGR4           MSTEHMEELNDQQIVRREKMAALREQGIDPFGKRFERTANSQELKDKYANLDKEQLHDKN
  D39             MSTEHMEELNDQQIVRREKMAALREQGIDPFGKRFERTANSQELKDKYANLDKEQLHDKN
  D39V            MSTEHMEELNDQQIVRREKMAALREQGIDPFGKRFERTANSQELKDKYANLDKEQLHDKN
  Hungary19A-6    MSTEHMEELNDQQIVRREKMAALREQGIDPFGKRFERTANSQELKDKYANLDKEQLHDKN
  EF3030          MSTEHMEELNDQQIVRREKMAALREQGIDPFGKRFERTANSQELKDKYANLDKEQLHDKN
                  ************************************************************
  
  TIGR4           ETATIAGRLITKRGKGKVGFAHLQDREGQIQIYVRKDAVGEENYEIFKKADLGDFLGVEG
  D39             ETATIAGRLVTKRGKGKVGFAHLQDREGQIQIYVRKDAVGEENYEIFKKADLGDFLGVEG
  D39V            ETATIAGRLVTKRGKGKVGFAHLQDREGQIQIYVRKDAVGEENYEIFKKADLGDFLGVEG
  Hungary19A-6    ETATIAGRLVTKRGKGKVGFAHLQDREGQIQIYVRKDAVGEENYEIFKKADLGDFLGVEG
  EF3030          ETATIAGRLVTKRGKGKVGFAHLQDREGQIQIYVRKDAVGEENYEIFKKADLGDFLGVEG
                  *********:**************************************************
  
  TIGR4           EVMRTDMGELSIKATHITHLSKALRPLPEKFHGLTDVETIYRKRYLDLISNRESFERFVT
  D39             EVMRTDMGELSIKATHITHLSKALRPLPEKFHGLTDVETIYRKRYLDLISNRESFERFVT
  D39V            EVMRTDMGELSIKATHITHLSKALRPLPEKFHGLTDVETIYRKRYLDLISNRESFERFVT
  Hungary19A-6    EVMRTDMGELSIKATHITHLSKALRPLPEKFHGLTDVETIYRKRYLDLISNRESFERFVT
  EF3030          EVMRTDMGELSIKATHITHLSKALRPLPEKFHGLTDVETIYRKRYLDLISNRESFERFVT
                  ************************************************************
  
  TIGR4           RSKIISEIRRYLDQKGFLEVETPVLHNEAGGAAARPFITHHNAQNIDMVLRIATELHLKR
  D39             RSKIISEIRRYLDQKGFLEVETPVLHNEAGGAAARPFITHHNAQNIDMVLRIATELHLKR
  D39V            RSKIISEIRRYLDQKGFLEVETPVLHNEAGGAAARPFITHHNAQNIDMVLRIATELHLKR
  Hungary19A-6    RSKIISEIRRYLDQKGFLEVETPVLHNEAGGAAARPFITHHNAQNIDMVLRIATELHLKR
  EF3030          RSKIISEIRRYLDQKGFLEVETPVLHNEAGGAAARPFITHHNAQNIDMVLRIATELHLKR
                  ************************************************************
  
  TIGR4           LIVGGMERVYEIGRIFRNEGMDATHNPEFTSIEVYQAYADFQDIMDLTEGIIQHAAKSVK
  D39             LIVGGMERVYEIGRIFRNEGMDATHNPEFTSIEVYQAYADFQDIMDLTEGIIQHAAKSVK
  D39V            LIVGGMERVYEIGRIFRNEGMDATHNPEFTSIEVYQAYADFQDIMDLTEGIIQHAAKSVK
  Hungary19A-6    LIVGGMERVYEIGRIFRNEGMDATHNPEFTSIEVYQAYADFQDIMDLTEGIIQHAAKSVK
  EF3030          LIVGGMERVYEIGRIFRNEGMDATHNPEFTSIEVYQAYADFQDIMDLTEGIIQHAAKSVK
                  ************************************************************
  
  TIGR4           GDGPVNYQGTEIKINEPFKRVHMVDAIREITGVDFWQDMTLEEAKAIAAEKKVPVEKHYT
  D39             GDGPVNYQGTEIKINEPFKRVHMVDAIREITGVDFWQDMTLEEAKAIAAEKKVPVEKHYT
  D39V            GDGPVNYQGTEIKINEPFKRVHMVDAIREITGVDFWQDMTLEEAKAIAAEKKVPVEKHYT
  Hungary19A-6    GDGPVNYQGTEIKINEPFKRVHMVDAIREITGVDFWQDMTLKEAKAIAAEKKVPVEKHYT
  EF3030          GDGPVNYQGTEIKINKPFKRVHMVDAIREITGVDFWQDMTLEEAKAIAAEKKVPVEKHYT
                  ***************:*************************:******************
  
  TIGR4           EVGHIINAFFEEFVEETLIQPTFVYGHPVAVSPLAKKNPEDQRFTDRFELFIMTKEYGNA
  D39             EVGHIINAFFEEFVEETLIQPTFVYGHPVAVSPLAKKNPEDQRFTDRFELFIMTKEYGNA
  D39V            EVGHIINAFFEEFVEETLIQPTFVYGHPVAVSPLAKKNPEDQRFTDRFELFIMTKEYGNA
  Hungary19A-6    EVGHIINAFFEEFVEETLIQPTFVYGHPVAVSPLAKKNPEDQRFTDRFELFIMTKEYGNA
  EF3030          EVGHIINAFFEEFVEETLIQPTFVYGHPVAVSPLAKKNPEDQRFTDRFELFIMTKEYGNA
                  ************************************************************
  
  TIGR4           FTELNDPIDQLSRFEAQAKAKELGDDEATGIDYDYIEALEYGMPPTGGLGIGIDRLCMLL
  D39             FTELNDPIDQLSRFEAQAKAKELGDDEATGIDYDYIEALEYGMPPTGGLGIGIDRLCMLL
  D39V            FTELNDPIDQLSRFEAQAKAKELGDDEATGIDYDYIEALEYGMPPTGGLGIGIDRLCMLL
  Hungary19A-6    FTELNDPIDQLSRFEAQAKAKELGDDEATGIDYDYIEALEYGMPPTGGLGIGIDRLCMLL
  EF3030          FTELNDPIDQLSRFEAQAKAKELGDDEATGIDYDYIEALEYGMPPTGGLGIGIDRLCMLL
                  ************************************************************
  
  TIGR4           TDTTTIRDVLLFPTMK
  D39             TDTTTIRDVLLFPTMK
  D39V            TDTTTIRDVLLFPTMK
  Hungary19A-6    TDTTTIRDVLLFPTMK
  EF3030          TDTTTIRDVLLFPTMK
                  ****************