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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN001936000
- symbol?: cbpE
- synonym:
- description?: phosphorylcholine esterase CbpE
- phosphorylcholine esterase CbpE
- choline binding protein E
- Choline binding protein E CbpE
- Autolysin
- MBL fold metallo-hydrolase
- choline-binding protein
- metallo-beta-lactamase domain protein
- Putative endo-beta-N-acetylglucosaminidase
- Teichoic acid phosphorylcholine esterase, choline-binding protein CbpE
- teichoic acid phosphorylcholine esterase/choline binding protein E
- Teichoic acid phosphorylcholine esterase/choline binding protein E (cbpE)
- pseudogene
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2321349..2323272
- occurrence?: in 100% of 41 strains
⊟Orthologs[edit | edit source]
SPN034156:
SPN034156_RS10445 (cbpE)
SPN034183:
SPN034183_RS04540 (cbpE)
SPN994038:
SPN994038_RS04450 (cbpE)
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MKKKLTSLALVGAFLGLSWYGNVQAQESSGNKIHFINVQEGGSDAIILESNGHFAMVDTG
D39 MKKKLTSLALVGAFLGLSWYGNVQAQESSGNKIHFINVQEGGSDAIILESNGHFAMVDTG
D39V MKKKLTSLALVGAFLGLSWYGNVQAQESSGNKIHFINVQEGGSDAIILESNGHFAMVDTG
Hungary19A-6 MKKKLTSLALVGAFLGLSWYGNVQAQESSGNKIHFINVQEGGSDAIILESNGHFAMVDTG
EF3030 MKKKLTSLALVGAFLGLSWYGNVQAQESSGNKIHFINVQEGGSDAIILESNGHFAMVDTG
************************************************************
TIGR4 EDYDFPDGSDSRYPWREGIETSYKHVLTDRVFRRLKELGVQKLDFILVTHTHSDHIGNVD
D39 EDYDFPDGSDSRYPWREGIETSYKHVLTDRVFRRLKELSVQKLDFILVTHTHSDHIGNVD
D39V EDYDFPDGSDSRYPWREGIETSYKHVLTDRVFRRLKELSVQKLDFILVTHTHSDHIGNVD
Hungary19A-6 EDYDFPDGSDSRYPWREGIETSYKHVLTDRVFRRLKELGVQKLDFILVTHTHSDHIGNVD
EF3030 EDYDFPDGSDSRYPWREGIETSYKHVLTDRVFRRLKELGVQKLDFILVTHTHSDHIGNVD
**************************************.*********************
TIGR4 ELLSTYPVDRVYLKKYSDSRITNSERLWDNLYGYDKVLQTAAEKGVSVIQNITQGDAHFQ
D39 ELLSTYPVDRVYLKKYSDSRITNSERLWDNLYGYDKVLQTATETGVSVIQNITQGDAHFQ
D39V ELLSTYPVDRVYLKKYSDSRITNSERLWDNLYGYDKVLQTATETGVSVIQNITQGDAHFQ
Hungary19A-6 ELLSTYPVDRVYLKKYSDSRITNSERLWDNLYGYDKVLQTAAEKGVSVIQNITQGDAHFQ
EF3030 ELLSTYPVDRVYLKKYSDSRITNSERLWDNLYGYDKVLQTAAEKGVSVIQNITQGDAHFQ
*****************************************:*.****************
TIGR4 FGDMDIQLYNYENETDSSGELKKIWDDNSNSLISVVKVNGKKIYLGGDLDNVHGAEDKYG
D39 FGDMDIQLYNYENETDSSGELKKIWDDNSNSLISVVKVNGKKIYLGGDLDNVHGAEDKYG
D39V FGDMDIQLYNYENETDSSGELKKIWDDNSNSLISVVKVNGKKIYLGGDLDNVHGAEDKYG
Hungary19A-6 FGDMDIELYNYENETDSSGELKKIWDDNSNSLISVVKVNGKKIYLGGDLDNVHGAEDKYG
EF3030 FGDMDIQLYNYENETDSSGELKKIWDDNSNSLISVVKVNGKKIYLGGDLDNVHGAEDKYG
******:*****************************************************
TIGR4 PLIGKVDLMKFNHHHDTNKSNTKDFIKNLSPSLIVQTSDSL--PWKNG--VDSEYVNWLK
D39 PLIGKVDLMKFNHHHDTNKSNTKDFIKNLSPSLIVQTSDSL--PWKNG--VDSEYVNWLK
D39V PLIGKVDLMKFNHHHDTNKSNTKDFIKNLSPSLIVQTSDSL--PWKNG--VDSEYVNWLK
Hungary19A-6 PLIGKVDLMKFNHHLDTKNSNTKNFIKNLSPEIIVQTSSSPIGSYDSGQEINREYISWLE
EF3030 PLIGKVDLMKFNHHHDTNKSNTKDFIKNLSPSLIVQTSDSL--PWKNG--VDSEYVNWLK
************** **::****:*******.:*****.* .:..* :: **:.**:
TIGR4 ERGIERINAASKDYDATVFDIRKDGFVNISTSYKPIPSFQAGWHKSAYGNWWYQAPDSTG
D39 ERGIERINAASKDYDATVFDIRKDGFVNISTSYKPIPSFQAGWHKSAYGNWWYQAPDSTG
D39V ERGIERINAASKDYDATVFDIRKDGFVNISTSYKPIPSFQAGWHKSAYGNWWYQAPDSTG
Hungary19A-6 SMGIQHINAASKDYDATVFDIRQDGLVNISTSYKPIPSFQAGWHKSSYGNWWYQAPDSTG
EF3030 ERGIERINAASKDYDATVFDIRKDGFVNISTSYKPIPSFQAGWHKSAYGNWWYQAPDSTG
. **::****************:**:********************:*************
TIGR4 EYAVGWNEIEGEWYYFNQTGILLQNQWKKWNNHWFYLTDSGASAKNWKKIAGIWYYFNKE
D39 EYAVGWNEIEGEWYYFNQTGILLQNQWKKWNNHWFYLTDSGASAKNWKKIDGIWYYFNKE
D39V EYAVGWNEIEGEWYYFNQTGILLQNQWKKWNNHWFYLTDSGASAKNWKKIDGIWYYFNKE
Hungary19A-6 EYAVGWNEIKGEWYYFNQTGILLQNQWKKWNNRWFYLTDSGVAAKNWKKIAGIWYYFNKE
EF3030 EYAVGWNEIEGEWYYFNQTGILLQNQWKKWNNHWFYLTDSGASAKNWKKIAGIWYYFNKE
*********:**********************:********.:******* *********
TIGR4 NQMEIGWIQDKEQWYYLDVDGSMKTGWLQYMGQWYYFAPSGEMKMGWVKDKETWYYMDST
D39 NQMEIGWVQDKEQWYYLDVDGSMKTGWLQYMGQWYYFAPSGEMKMGWVKDKETWYYMDST
D39V NQMEIGWVQDKEQWYYLDVDGSMKTGWLQYMGQWYYFAPSGEMKMGWVKDKETWYYMDST
Hungary19A-6 NQMEIGWIQDKEQWYYLDVDGSMKTGWLQYKGQWYYFAPSGEMKTGWVKDKEAWYYMDST
EF3030 NQMEIGWIQDKEQWYYLDVDGSMKTGWLQYMGQWYYFAPSGEMKMGWVKDKETWYYMDST
*******:********************** ************* *******:*******
TIGR4 GVMKTGEIEVAGQHYYLEDSGAMKQGWHKKANDWYFYKTDGSRAVGWIKDKDKWYFLKEN
D39 GVMKTGEIEVAGQHYYLEDSGAMKQGWHKKANDWYFYKTDGSRAVGWIKDKDKWYFLKEN
D39V GVMKTGEIEVAGQHYYLEDSGAMKQGWHKKANDWYFYKTDGSRAVGWIKDKDKWYFLKEN
Hungary19A-6 GIMKTGEIEVAGHHYYLEESGAMKQGWHKKANDWYFYKTDGSRAVGWIKDKDKWYFLKEN
EF3030 GVMKTGEIEVAGQHYYLEDSGAMKQGWHKKANDWYFYKTDGSRAVGWIKDKDKWYFLKEN
*:**********:*****:*****************************************
TIGR4 GQLLVNGKTPEGYTVDSSGAWLVDVSIEKSATIKTTSHSEIKESKEVVKKDLENKETSQH
D39 GQLLVNGKTPEGYTVDSSGAWLVDVSIEKSATIKTTSHSEIKESKEVVKKDLENKETSQH
D39V GQLLVNGKTPEGYTVDSSGAWLVDVSIEKSATIKTTSHSEIKESKEVVKKDLENKETSQH
Hungary19A-6 GQLLVNGKTPEGYTVDSSGAWLVDVSIEKSATIKTTSHSEIKESKEVVKKDLENKETSQH
EF3030 GQLLVNGKTPEGYTVDSSGAWLVDVSIEKSATIKTTSHSEIKESKEVVKKDLENKETSQH
************************************************************
TIGR4 ESVTNFSTSQDLTSSTSQSSETSVNKSESEQ
D39 ESVTNFSTSQDLTSSTSQSSETSVNKSESEQ
D39V ESVTNFSTSQDLTSSTSQSSETSVNKSESEQ
Hungary19A-6 ESVTNSSTSQDLTSSTSQSSETSVNKSESEQ
EF3030 ESVTNFSTSQDLTSSTSQSSETSVNKSESEQ
***** *************************