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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 16-DEC-2024
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae CGSP14
- locus tag: SPCG_RS04800 [old locus tag: SPCG_0922 ]
- pan locus tag?: PNEUPAN001936000
- symbol: SPCG_RS04800
- pan gene symbol?: phoH
- synonym:
- product: PhoH family protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPCG_RS04800 [old locus tag: SPCG_0922 ]
- symbol: SPCG_RS04800
- product: PhoH family protein
- replicon: chromosome
- strand: +
- coordinates: 905765..906733
- length: 969
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_010582 (905765..906733) NCBI
- BioCyc: SPCG_RS04800 BioCyc
- MicrobesOnline: see SPCG_0922
- PneumoBrowse for strain D39V: SPV_0838 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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961TTGAAGGAACATTCAATAGACATTCAACTGAGTCATCCAGATGACCTGTTTCATCTTTTT
GGTTCCAATGAACGCCATCTTCGTTTGATGGAAGAAGAGCTTGATGTTGTGATTCATGCT
CGTACGGAGATTGTCCAGGTTTTGGGAGAAGAGTCTGCCTGTGAGGAAGCCCGTCAAGTT
ATTCAGGCTTTGATGGTCTTGGTAAATCGTGGGATGACCGTTGGTACGCCAGATGTAGTC
ACTGCGATTAGCATGGTCAAAAATGATGAAATTGACAAGTTTGTCGCCCTTTACGAAGAA
GAAATTATCAAAGATAATACTGGGAAACCTATCCGTGTCAAAACCCTAGGGCAAAAGCTT
TATGTGGACAGTGTCAAACAGCATGATGTGACCTTTGGAATTGGGCCAGCAGGTACAGGG
AAGACCTTCCTTGCAGTGACCTTGGCAGTGACTGCCCTTAAACGTGGGCAAGTCAAGCGA
ATTATCCTAACTCGTCCAGCGGTGGAAGCGGGAGAGAGTCTTGGATTTCTTCCGGGTGAT
CTTAAGGAGAAGGTGGATCCTTACCTTCGTCCTGTTTACGATGCCTTGTATCAAATTCTT
GGGAAAGACCAAACGACTCGTCTCATGGAGCGTGAAATTATCGAAATTGCGCCCCTTGCC
TATATGCGTGGCCGGACCTTGGATGATGCCTTTGTCATTCTCGATGAGGCGCAAAACACG
ACCATCATGCAGATGAAGATGTTCTTGACGCGTTTAGGTTTTCATTCTAAGATGATTGTC
AATGGAGATATTAGTCAGATTGACCTGCCACGTAATGTCAAGTCCGGTTTGATTGATGCT
CAAGAGAAACTCAAGAACATCCATCAGATTGACTTTGTTCATTTTTCAGCCAAGGATGTG
GTTCGCCATCCTGTTGTCGCTCAGATTATCCGAGCCTATGAATATTCTACTGAAGTTGCA
CACGACTGA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPCG_RS04800 [old locus tag: SPCG_0922 ]
- symbol: SPCG_RS04800
- description: PhoH family protein
- length: 322
- theoretical pI: 5.97086
- theoretical MW: 36270.7
- GRAVY: -0.106832
⊟Function[edit | edit source]
- TIGRFAM: DNA metabolism DNA replication, recombination, and repair putative DNA helicase (TIGR00376; EC 3.6.4.12; HMM-score: 15.9)DNA metabolism DNA replication, recombination, and repair exodeoxyribonuclease V, alpha subunit (TIGR01447; EC 3.1.11.5; HMM-score: 15.7)
- TheSEED: see SPCG_0922
- PFAM: P-loop_NTPase (CL0023) PhoH; PhoH-like protein (PF02562; HMM-score: 318.3)and 7 moreAAA_30; AAA domain (PF13604; HMM-score: 27.6)AAA_19; AAA domain (PF13245; HMM-score: 24.5)IstB_IS21; IstB-like ATP binding protein (PF01695; HMM-score: 23.1)AAA_22; AAA domain (PF13401; HMM-score: 21.1)AAA_25; AAA domain (PF13481; HMM-score: 16.3)Zot; Zonular occludens toxin (Zot) (PF05707; HMM-score: 15.6)UvrD-helicase; UvrD/REP helicase N-terminal domain (PF00580; HMM-score: 15.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.97
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0.01
- Extracellular Score: 0.02
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9653
- Cytoplasmic Membrane Score: 0.0285
- Cell wall & surface Score: 0.0001
- Extracellular Score: 0.0061
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.002196
- TAT(Tat/SPI): 0.000162
- LIPO(Sec/SPII): 0.000173
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000658183 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MKEHSIDIQLSHPDDLFHLFGSNERHLRLMEEELDVVIHARTEIVQVLGEESACEEARQVIQALMVLVNRGMTVGTPDVVTAISMVKNDEIDKFVALYEEEIIKDNTGKPIRVKTLGQKLYVDSVKQHDVTFGIGPAGTGKTFLAVTLAVTALKRGQVKRIILTRPAVEAGESLGFLPGDLKEKVDPYLRPVYDALYQILGKDQTTRLMEREIIEIAPLAYMRGRTLDDAFVILDEAQNTTIMQMKMFLTRLGFHSKMIVNGDISQIDLPRNVKSGLIDAQEKLKNIHQIDFVHFSAKDVVRHPVVAQIIRAYEYSTEVAHD
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0838 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]