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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN002089000
- symbol?: ccrB
- synonym:
- description?: recombinase family protein
- recombinase family protein
- putative site-specific recombinase (pseudogene)
- Low similarity to site-specific recombinase
- site-specific recombinase, resolvase family protein
- serine recombinase
- site-specific recombinase
- site-specific recombinase, resolvase family
- DNA resolvase (recombinase)
- Phage integrase
- Phage integrase (Site-specific recombinase)
- recombinase
- Serine recombinase PinR
- site-specific DNA recombinase
- site-specific recombinase/resolvase
- site-specific recombinase-like protein
- pseudogene
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2580998..2582681
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR
D39 MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSGKSIEGR
D39V MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSGKSIEGR
Hungary19A-6 MSKEKIKVYLYTRVSTSIQIEGYSLGAQKSRMKAFAIYNDYEIVGEYEDAGKSGKSIEGR
EF3030 MSKEKIKVYLYTRVSTSIKIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSGKSIEGR
******************:****** ***************************.******
TIGR4 IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK
D39 IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK
D39V IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK
Hungary19A-6 IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLQIMQDYGVNLICVEDGIDSSK
EF3030 IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLQIMQDYGVNLICVEDGIDSSK
***************************************:********************
TIGR4 DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE
D39 DAGKLMISVLSAVAEIERENIRIQTMEGRIQKAREGKWNGGFAPYGYKLEDGKLFINEEE
D39V DAGKLMISVLSAVAEIERENIRIQTMEGRIQKAREGKWNGGFAPYGYKLEDGKLFINEEE
Hungary19A-6 DAGKLMISVLSAVAEIERENIRIQTMEGCIQKAREGKWNGGFAPYGYKLEDGKLFINEEE
EF3030 DAGKLMISVLSAVAEIERENISIQTMEGRIQKAREGKWNGGFAPYGYKLEDGKLFINEEE
********************* ****** **** **************************
TIGR4 AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK
D39 AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK
D39V AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK
Hungary19A-6 AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK
EF3030 AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK
************************************************************
TIGR4 IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN
D39 IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN
D39V IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAARVKLKSQAKKYEHVN
Hungary19A-6 IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYERVN
EF3030 IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN
*********************************************:***********:**
TIGR4 KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS
D39 KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGHKCTFS
D39V KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGHKCTFS
Hungary19A-6 KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCKHRQMIRGHECTFS
EF3030 KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGHKCTFS
**********************************************:*******::****
TIGR4 KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK
D39 KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK
D39V KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK
Hungary19A-6 KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK
EF3030 KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK
************************************************************
TIGR4 FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD
D39 FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKIDELESSLIDAKAKKQTIEAEKLTGD
D39V FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKIDELESSLIDAKAKKQTIEAEKLTGD
Hungary19A-6 FKLIEEIDNLDVEDKHYKRRKQDLDDRLCRMYDKIDELESSLIDAKAKKQTIEAEKLTGD
EF3030 FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKIDELESSLIDAKAKKQTIEAEKLTGD
**************************** *****:*************************
TIGR4 NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN
D39 NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN
D39V NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN
Hungary19A-6 NIYKVLIYFDKLYKVMNDVEHRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN
EF3030 NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN
********************:***************************************
TIGR4 IGLDNDEQVECVSLLEKRS
D39 IDLDNDEQVECVSLLEKRS
D39V IDLDNDEQVECVSLLEKRS
Hungary19A-6 IGLDNDEQVECVSLLEKRS
EF3030 IDLDNDEQVECVSLLEKRS
*.*****************