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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 22-FEB-2023

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae AP200
  • locus tag: SPAP_RS05715 [old locus tag: SPAP_1155 ]
  • pan locus tag?: PNEUPAN002089000
  • symbol: SPAP_RS05715
  • pan gene symbol?: ccrB
  • synonym:
  • product: recombinase family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPAP_RS05715 [old locus tag: SPAP_1155 ]
  • symbol: SPAP_RS05715
  • product: recombinase family protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1096009..1097688
  • length: 1680
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_014494 (1096009..1097688) NCBI
  • BioCyc: SPAP_RS05715 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_0921 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    ATGTCAAAAGAAAAAATAAAAGTATACCTCTATACACGAGTATCTACGTCAATACAGATA
    GAGGGGTATTCGTTAGAGGCACAAAAATCACGAATGAAAGCTTTTGCTATTTACAATGAT
    TATGAAATTGTTGGAGAATATGAAGATGCCGGGAAGTCTGGCAAGTCTATTGAAGGTAGA
    ATACAGTTCAATCGAATGATGGAAGATATAAAATCTGGAAAAGATGGAGTATCTTTTGTT
    CTTGTGTTTAAGTTATCAAGATTTGCAAGAAATGCCGCTGATGTTCTTTCTACACTTCAG
    ATAATGCAGGATTATGGAGTTAATCTTATCTGCGTTGAAGATGGCATTGATTCATCTAAA
    GATGCTGGGAAACTAATGATTTCTGTTTTATCAGCTGTGGCTGAAATAGAAAGAGAAAAC
    ATCCGTATTCAAACAATGGAAGGTCGCATTCAAAAAGCAAGGGAAGGAAAATGGAATGGT
    GGCTTTGCTCCGTATGGATATAAACTTGAAGACGGCAAGCTGTTTATAAATGAGGAAGAG
    GCAGTTGCAATAAGAACGATTTTCGACCAGTATGTAAATACTACGATAGGAGCCAATGGG
    ATATCTAAATACTTAGAGAATCATGGAATTAGAAAAATCCCAAGACAGAATGGTAAGAAT
    CCTTTGTTTGATGCAGGTCTTATAAGAAAGATATTAAAGAATCCTGTATATAATGGGAAA
    ATAGCATTTGGAAGAAGAACTTTAGAAAAAGTTCATGGTACAAGAAATGAATATAAGCAG
    GTTGAACAAGATGAATATCTAATATCTGAAGGGATACATGAAGCTATAGTTTCCGATGAA
    GTTTGGCAAGCTGCTCAGGTTAAGCTAAAATCTCAAGCAAAGAAATATGAGCATGTGAAT
    AAAGGAAAAGATACACGCACACACTTGCTTTCTGGAATTGTAAAATGCCCGATATGTGGA
    GTGGGAATGTTTGGGAACAAGTGTATCAAGAAAAAGAAAGATGGCACAAAGTATAAAGAT
    TTTTATTACTATGGTTATAAACATAGGCAGATGATAAGAGGTCATAAGTGTACATTCAGT
    AAGCAAATTAGAGAAGAATTGTTAGATGATGCTGTTGCAGAGGTGATTGTCAAGATAGTA
    AGTAATCCGAAATTTGCTTCTATGATGCAAGAAAAAATCAACATGAAGGTGGATACCTCT
    GAAATAGAAAAAGAAATAGATAATTACCAAAAGGAATTGAGAAAGAGTCATTCTACAAAG
    TTTAAGCTAATTGAGGAAATAGATAATTTAGATGTTGAAGATAAGCATTATAAGAGAAGG
    AAACAGGATTTAGATGATAGACTATATCGTATGTATGACAAAATAGATGAATTAGAATCA
    TCACTAATTGATGCGAAAGCAAAGAAACAGACTATTGAAGCTGAAAAGCTTACAGGAGAT
    AACATATATAAGGTTCTGATCTATTTTGATAAGCTCTATAAAGTCATGAATGATGTAGAG
    CGTAGGCAGTTAATTTCAGCTTTGATTTCTGAAATTCAAGTTTATGAAGAAAAACAATCT
    AACGGACAATGGCTAAAATCCATTACTTTTAAGCTACCAATTATAGAAGAAAATCTCAAC
    ATAGGTTTGGATAATGATGAACAAGTTGAATGTGTAAGTTTATTAGAGAAACGTAGTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPAP_RS05715 [old locus tag: SPAP_1155 ]
  • symbol: SPAP_RS05715
  • description: recombinase family protein
  • length: 559
  • theoretical pI: 8.96581
  • theoretical MW: 64493.5
  • GRAVY: -0.585689

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SPAP_1155
  • PFAM:
    no clan defined Resolvase; Resolvase, N terminal domain (PF00239; HMM-score: 128.9)
    and 11 more
    Recombinase; Recombinase (PF07508; HMM-score: 69.6)
    Zn_Beta_Ribbon (CL0167) Zn_ribbon_recom; Recombinase zinc beta ribbon domain (PF13408; HMM-score: 40.2)
    no clan defined CENP-F_leu_zip; Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 (PF10473; HMM-score: 16.9)
    Catalase-rel; Catalase-related immune-responsive (PF06628; HMM-score: 12.9)
    Cnn_1N; Centrosomin N-terminal motif 1 (PF07989; HMM-score: 12.2)
    DUF6730; Family of unknown function (DUF6730) (PF20503; HMM-score: 12.2)
    DUF1664; Protein of unknown function (DUF1664) (PF07889; HMM-score: 11.2)
    ERM_helical; Ezrin/radixin/moesin, alpha-helical domain (PF20492; HMM-score: 10.3)
    APG6_N; Apg6 coiled-coil region (PF17675; HMM-score: 8.9)
    NUDIX (CL0261) MRP-L46; 39S mitochondrial ribosomal protein L46 (PF11788; HMM-score: 7.4)
    no clan defined CENP-H; Centromere protein H (CENP-H) (PF05837; HMM-score: 6.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9706
    • Cytoplasmic Membrane Score: 0.0011
    • Cell wall & surface Score: 0.0004
    • Extracellular Score: 0.028
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.013396
    • TAT(Tat/SPI): 0.000994
    • LIPO(Sec/SPII): 0.001538
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000031851 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSGKSIEGRIQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLQIMQDYGVNLICVEDGIDSSKDAGKLMISVLSAVAEIERENIRIQTMEGRIQKAREGKWNGGFAPYGYKLEDGKLFINEEEAVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGKIAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVNKGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGYKHRQMIRGHKCTFSKQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTKFKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKIDELESSLIDAKAKKQTIEAEKLTGDNIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLNIGLDNDEQVECVSLLEKRS

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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