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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN002654000
- symbol?: ywbD
- synonym:
- description?: class I SAM-dependent rRNA methyltransferase
- class I SAM-dependent rRNA methyltransferase
- conserved hypothetical protein
- methyltransferase
- Ribosomal RNA large subunit methyltransferase I
- putative SAM-dependent methyltransferase
- LSU m5C1962 methyltransferase RlmI
- Predicted SAM-dependent methyltransferase
- Putative ribosomal RNA large subunit methyltransferase YwbD
- SAM-dependent methyltransferase
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 3509468..3510631
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MNRIRVSKRVEKKLAKGLVLLEASDLENVNLKDQEVEVQGQEGNFLGTAYLSQQNKGLGW
D39 MNRIRVSKRVEKKLAKGLVLLEASDLENVNLKDQEVEVQGQEGNFLGTAYLSQQNKGLGW
D39V MNRIRVSKRVEKKLAKGLVLLEASDLENVNLKDQEVEVQGQEGNFLGTAYLSQQNKGLGW
Hungary19A-6 MNRIRVSKRVEKKLAKGLVLLEASDLENVNLKDQEVEVQGQEGNFLGTAYLSQQNKGLGW
EF3030 MNRIRVSKRVEKKLAKGLVLLEASDLENVNLKDQEVEVQGQEGNFLGTAYLSQQNKGLGW
************************************************************
TIGR4 FISKDKVAFNQAFFETLFRKAKEKRNAYYQDDLTTAFRLFNQEGDGFGGLTVDLYGDYAV
D39 FVSKDKVAFNQAFFETLFRKAKEKRSAYYQDDLTTAYRLFNQEGDGFGGLTVDLYGDYAV
D39V FVSKDKVAFNQAFFETLFRKAKEKRSAYYQDDLTTAYRLFNQEGDGFGGLTVDLYGDYAV
Hungary19A-6 FVSKDKVAFNQTFFETLFRKAKEKRNAYYQDDLTTAFRLFNQEGDGFGGLTVDLYGDYAV
EF3030 FVSKDKVAFNQAFFETLFRKAKEKRSAYYQDDLTTTYRLFNQEGDGFGGLTVDLYGDYAV
*:*********:*************.*********::***********************
TIGR4 FSWYNSYVYQIRQTISEAFRQVFPEVLGAYEKIRFKGLDYESAHVYGQEAPDFFNVLENG
D39 FSWYNSYVYQIRQTISEAFRQVFPEVLGDYEKIRFKGLDYESAHVYGQEAPDFFTVLENG
D39V FSWYNSYVYQIRQTISEAFRQVFPEVLGDYEKIRFKGLDYESAHVYGQEAPDFFTVLENG
Hungary19A-6 FSWYNSYVYQIRQTISEAFRQVFPEVLGAYEKIRFKGFDYESAHVYGQEAPDFFTVLENG
EF3030 FSWYNSYVYQIRQTISEAFRQVFPEVLGAYEKIRFKGLDYESAHVYGQEAPDFFTVLENG
**************************** ********:****************.*****
TIGR4 VLYQVFMNDGLMTGIFLDQHEVRGSLVDGLAMGKSLLNMFSYTAAFSVAAAMGGASHTTS
D39 VLYQVFMNDGLMTGIFLDQHEVRGSLVDGLAMGKSLLNMFSYTAAFSVAAAMGGASQTTS
D39V VLYQVFMNDGLMTGIFLDQHEVRGSLVDGLAMGKSLLNMFSYTAAFSVAAAMGGASQTTS
Hungary19A-6 VLYQVFMNDGLMTGIFLDQHEVRGSLVDGLAMGKSLLNMFSYTAAFSVAAAMGGASQTTS
EF3030 VLYQVFMNDGLMTGIFLDQHEVRGSLVDGLAMGKSLLNMFSYTAAFSVAAAMGGASQTTS
********************************************************:***
TIGR4 VDLAKRSRELSQAHFQANGLSTDEHRFIVMDVFEYFKYAKRKDLTYDVIVLDPPSFARNK
D39 VDLAKRSRELSQAHFQANGLSTDEHRFIVMDVFEYFKYAKRKNLTYDVIVLDPPSFARNK
D39V VDLAKRSRELSQAHFQANGLSTDEHRFIVMDVFEYFKYAKRKNLTYDVIVLDPPSFARNK
Hungary19A-6 VDLAKRSRELSQAHFQANGLSTDEHRFIVMDVFEYFKYAKRKDLTYDVIVLDPPSFARNK
EF3030 VDLAKRSRELSQAHFQANGLSTDEHRFIVMDVFEYFKYAKRKDLTYDVIVLDPPSFARNK
******************************************:*****************
TIGR4 KQTFSVAKDYHKLISQSLEILNPGGIIIASTNAANVSRQKFTEQIDKGFAGRSYQILNKY
D39 KQTFSVAKDYHKLISQSLEILNPGGIIIASTNAANVSRQKFTEQIDKGFAGRSYQILNKY
D39V KQTFSVAKDYHKLISQSLEILNPGGIIIASTNAANVSRQKFTEQIDKGFAGRSYQILNKY
Hungary19A-6 KQTFSVAKDYHKLISQSLEILNPGGIIIASTNAANVSRQKFTEQIDKGFAGRSYQILNKY
EF3030 KQTFSVAKDYHKLISQSLEILNPGGIIIASTNAANVSRQKFTEQIDKGFAGRSYQILNKY
************************************************************
TIGR4 GLPADFAYNKKDESSNYLKVISMKVSK
D39 GLPADFAYNKKDESSNYLKVISMKVSK
D39V GLPADFAYNKKDESSNYLKVISMKVSK
Hungary19A-6 GLPADFAYNKKDESSNYLKVISMKVSK
EF3030 GLPADFAYNKKDESSNYLKVISMKVSK
***************************