Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN003647000
- symbol?: macB_2
- synonym:
- description?: ABC transporter permease
- ABC transporter permease
- puttaive FtsX-family transport protein
- efflux ABC transporter, permease protein
- FtsX-like permease family protein
- permease
- ABC transporter, permease protein
- conserved hypothetical protein
- Macrolide export ATP-binding/permease protein
- ABC-type antimicrobial peptide transport system, permease component
- conserved hypothetical membrane protein
- efflux ABC transporter permeae
- Macrolide export ATP-binding/permease protein MacB
- putative FtsX-family transport protein (pseudogene)
- pseudogene
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4790013..4791022
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MNMSNITIDGQEMDLSQTMPSYAQVVSLYDDTSISVSNNETDKVLAGSLYTDTNEQGLTI
D39 MNMSNITIDGQEMDLSQTMPSYAQVVSLYDDTSISVSNNETDKVLAGSLYTDTNEQGLTI
D39V MNMSNITIDGQEMDLSQTMPSYAQVVSLYDDTSISVSNNETDKVLAGSLYTDTNEQGLTI
************************************************************
TIGR4 PSSLLKNWNEQTGKNLTANDLIGKSVSASIVESAAETSKIAQFQTKIVRVINDEDDMEDS
D39 PSSLLKNWNEQTGKNLTANDLIGKSVSASIVESAAEASKIAQFQTKIVRVINDEDDMEDS
D39V PSSLLKNWNEQTGKNLTANDLIGKSVSASIVESAAEASKIAQFQTKIVRVINDEDDMEDS
************************************:***********************
TIGR4 NSFMLSHQMETILKEAGFTKAVSYFILELKDPSQTKVVTEELQKNKKYTVLSQQRVLDIV
D39 NSFMLSHQMETILKEAGFTKAVSYFILELKDPSQTKVVTEELQKNKKYTVLSQQRVLDIV
D39V NSFMLSHQMETILKEAGFTKAVSYFILELKDPSQTKVVTEELQKNKKYTVLSQQRVLDIV
************************************************************
TIGR4 ITFIRVIQGLLIVLSSQAIVVAAVMIGIIIYINIMQRSKEIGVMKAVGYQNRDVKGIFIY
D39 ITFIRVIQGLLIVLSSQAIVVAAVMIGIIIYINIMQRSKEIGVMKAVGYQNRGVKGIFIY
D39V ITFIRVIQGLLIVLSSQAIVVAAVMIGIIIYINIMQRSKEIGVMKAVGYQNRGVKGIFIY
****************************************************.*******
TIGR4 EAIWIVGIALLLAFLVAQGVGSLANAIVSHFYPSITKVFKLNLLSVLGTLVFALLLGYVS
D39 EAIWIVGIALLLAFLVAQGVGSLANAIVSHFYPSITKVFELNLLSVLGTLVFALLLGYVS
D39V EAIWIVGIALLLAFLVAQGVGSLANAIVSHFYPSITKVFELNLLSVLGTLVFALLLGYVS
***************************************:********************
TIGR4 AYFPARKISKMDPIESLCYE
D39 AYFPARKISKMDPVESLRYE
D39V AYFPARKISKMDPVESLRYE
*************:*** **