From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 22-NOV-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae P1031
  • locus tag: SPP_RS10110 [old locus tag: SPP_2051 ]
  • pan locus tag?: PNEUPAN003647000
  • symbol: SPP_RS10110
  • pan gene symbol?: macB_2
  • synonym:
  • product: ABC transporter permease

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPP_RS10110 [old locus tag: SPP_2051 ]
  • symbol: SPP_RS10110
  • product: ABC transporter permease
  • replicon: chromosome
  • strand: -
  • coordinates: 1876848..1877810
  • length: 963
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_012467 (1876848..1877810) NCBI
  • BioCyc: SPP_RS10110 BioCyc
  • MicrobesOnline: see SPP_2051
  • PneumoBrowse for strain D39V: SPV_1824 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGAACATGTCAAATATTACTATAGATGGGCAAGAAATAGATCTGAGTCAAACGATGCCT
    TCTTATGCTCAAGTAGTGAGTCTTTATGATGATACAAGTATCTCTGTTAGTAGTAATGAG
    ACGGACAAAGTGTTGGCTGGATCCCTCTATACTGATACAAATGAACAGGGATTAACGATT
    CCAAGCAGTTTACTAAAAAATTGGAATGAACAGACAGGAAAAAATTTGACAGCTAATGAT
    CTTATTGGCAAATCAGTCTCAGCCAGCATTGTAGAAAGTGCTGCCGAAACTAGTAAGATT
    GCTCAATTTCAAACGAAGATTGTACGTGTAATCAATGATGAAGATGACATGGAGGACAGC
    AACAGTTTCATGCTGTCTCATCAAATGGAAACGATTTTGAAAGAGGCTGGATTTACGAAA
    GCTGTATCTTATTTTATCTTGGAACTCAAAGATCCATCACAGACAAAAGTAGTAACAGAA
    GAATTACAGAAAAATAAGAAGTATACTGTGCTTTCTCAACAGAGAGTTCTTGATATTGTG
    ATTACCTTTATTCGTGTTATTCAGGGATTATTGATTGTGCTTTCATCACAAGCTATTGTG
    GTAGCAGCGGTTATGTTTGGTATCATTATTTACATCAATATCATGCAACGTTCTAAGGAA
    ATAGGTGTCATGAAGGCAGTTGGTTATCAGAATCGTGATGTCAAAGGAATTTTTATTTAC
    GAGGCTATCTGGATTGTAGGCATCGCCTTGCTGCTGGCATTTTTGGTTGCACAAGGGGTG
    GGAAGTTTGGCGAATGCGATTGTAAGTCACTTTTACCCATCCATCACTAAGGTTTTTGAA
    TTAAATCTTTTATCTGTTTTAGGAACTCTAGTTTTCGCTCTATTACTTGGTTATGTCTCA
    GCCTACTTCCCGGCGCGTAAGATTAGTAAAATGGATCCTGTAGAACCGTTACGCTATGAA
    TAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    963

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPP_RS10110 [old locus tag: SPP_2051 ]
  • symbol: SPP_RS10110
  • description: ABC transporter permease
  • length: 320
  • theoretical pI: 4.76793
  • theoretical MW: 35374.7
  • GRAVY: 0.2475

⊟Function[edit | edit source]

  • TIGRFAM:
    acidobacterial duplicated orphan permease (TIGR03434; HMM-score: 52.7)
    and 5 more
    Genetic information processing Protein fate Protein and peptide secretion and trafficking lipoprotein releasing system, transmembrane protein, LolC/E family (TIGR02212; HMM-score: 40)
    Cellular processes Cellular processes Cell division putative protein insertion permease FtsX (TIGR00439; HMM-score: 20.9)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking putative protein insertion permease FtsX (TIGR00439; HMM-score: 20.9)
    Metabolism Transport and binding proteins Other ABC exporter transmembrane subunit, DevC protein (TIGR01185; HMM-score: 20.4)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking lipoprotein releasing system, transmembrane protein LolE (TIGR02213; HMM-score: 18.4)
  • TheSEED: see SPP_2051
  • PFAM:
    BPD_transp_1 (CL0404) FtsX; FtsX-like permease family (PF02687; HMM-score: 62.3)
    and 2 more
    LptF_LptG; Lipopolysaccharide export system permease LptF/LptG (PF03739; HMM-score: 13.2)
    Tudor (CL0049) Tudor_3; DNA repair protein Crb2 Tudor domain (PF18115; HMM-score: 12.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 3
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9994
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0006
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.024152
    • TAT(Tat/SPI): 0.001299
    • LIPO(Sec/SPII): 0.001558
  • predicted transmembrane helices (TMHMM): 3

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_001057328 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MNMSNITIDGQEIDLSQTMPSYAQVVSLYDDTSISVSSNETDKVLAGSLYTDTNEQGLTIPSSLLKNWNEQTGKNLTANDLIGKSVSASIVESAAETSKIAQFQTKIVRVINDEDDMEDSNSFMLSHQMETILKEAGFTKAVSYFILELKDPSQTKVVTEELQKNKKYTVLSQQRVLDIVITFIRVIQGLLIVLSSQAIVVAAVMFGIIIYINIMQRSKEIGVMKAVGYQNRDVKGIFIYEAIWIVGIALLLAFLVAQGVGSLANAIVSHFYPSITKVFELNLLSVLGTLVFALLLGYVSAYFPARKISKMDPVEPLRYE

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPP_RS10110&oldid=124083"