From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae 670-6B
  • locus tag: SP670_1328 [new locus tag: SP670_RS06575 ]
  • pan locus tag?: PNEUPAN001992000
  • symbol: SP670_1328
  • pan gene symbol?: rocS
  • synonym:
  • product: conserved hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SP670_1328 [new locus tag: SP670_RS06575 ]
  • symbol: SP670_1328
  • product: conserved hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1251135..1251626
  • length: 492
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGAGTATTGAAATGACCGTCAGTGAGATTGCAGAGGTCTTAGGATTATCTCGCCAAGCA
    ATCAATAACCGTGTCAAAGAATTACCAGAAGAAGACACAGATAAAAATGACAAAGGGGTA
    ACAGTTGTTACCAGAAGTGGCTTGATTAAGCTAGAAGAAATCTATAAAAAAACGATTTTT
    GAAGATGAGCCTGTCAGTGAAGATGTCAAACAACGTGAACTGATGGAGATTCTAGTGGAT
    GAGAAGAATGCAGAAATTCTTCGTCTTTATGAACAATTAAAAGCCAAGGATCGTCAGTTA
    TCAGAAAAAGACGAGCAGATGCGTATCAAAGACCGTCAGATTGCTGAGAAAGACAAACAA
    TTAGATCAGCAACAACAATTGACCCTTCAAGCCATGAAGGATCAAGAAAATCTTAAGCTA
    GAGCTGGACCAAGCAAAAGAAGAAGTCCAATCCACTAAGAAAGGCTTTTTTGCTCGTTTA
    TTTGGAGGATAA
    60
    120
    180
    240
    300
    360
    420
    480
    492

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SP670_1328 [new locus tag: SP670_RS06575 ]
  • symbol: SP670_1328
  • description: conserved hypothetical protein
  • length: 163
  • theoretical pI: 4.58434
  • theoretical MW: 18970.4
  • GRAVY: -0.851534

⊟Function[edit | edit source]

  • TIGRFAM:
    probable regulatory domain (TIGR03879; HMM-score: 16.1)
    Signal transduction Regulatory functions DNA interactions biotin operon repressor (TIGR00122; HMM-score: 15.4)
    Unknown function General DNA binding domain, excisionase family (TIGR01764; HMM-score: 14.6)
    and 4 more
    RNA polymerase sigma factor, sigma-70 family (TIGR02937; HMM-score: 12.5)
    RNA polymerase sigma-70 factor, Bacteroides expansion family 1 (TIGR02985; HMM-score: 11)
    Genetic information processing Transcription Degradation of RNA ribonuclease Y (TIGR03319; EC 3.1.-.-; HMM-score: 10.2)
    Genetic information processing Mobile and extrachromosomal element functions Plasmid functions integrating conjugative element protein, PFL_4705 family (TIGR03752; HMM-score: 6.5)
  • TheSEED  :
    • Transcriptional regulator OrfX
  • PFAM:
    no clan defined DUF536; Protein of unknown function, DUF536 (PF04394; HMM-score: 66.7)
    and 23 more
    HTH (CL0123) HTH_24; Winged helix-turn-helix DNA-binding (PF13412; HMM-score: 23.6)
    MarR_2; MarR family (PF12802; HMM-score: 22.8)
    HTH_AsnC-type; AsnC-type helix-turn-helix domain (PF13404; HMM-score: 21.5)
    DUF1323; Putative transcription regulator (DUF1323) (PF07037; HMM-score: 20.8)
    HTH_23; Homeodomain-like domain (PF13384; HMM-score: 20.8)
    HTH_Mga; M protein trans-acting positive regulator (MGA) HTH domain (PF08280; HMM-score: 20.3)
    HTH_11; HTH domain (PF08279; HMM-score: 19.2)
    HTH_Crp_2; Crp-like helix-turn-helix domain (PF13545; HMM-score: 18.4)
    HTH_29; Winged helix-turn helix (PF13551; HMM-score: 16.8)
    Sigma70_r4; Sigma-70, region 4 (PF04545; HMM-score: 16.5)
    no clan defined FAM76; FAM76 protein (PF16046; HMM-score: 16.5)
    HTH (CL0123) Sigma70_r4_2; Sigma-70, region 4 (PF08281; HMM-score: 16.3)
    HTH_17; Helix-turn-helix domain (PF12728; HMM-score: 15.2)
    MarR; MarR family (PF01047; HMM-score: 14.8)
    HTH_20; Helix-turn-helix domain (PF12840; HMM-score: 14.5)
    TrmB; Sugar-specific transcriptional regulator TrmB (PF01978; HMM-score: 13.2)
    HTH_Tnp_ISL3; Helix-turn-helix domain of transposase family ISL3 (PF13542; HMM-score: 12.6)
    HTH_28; Helix-turn-helix domain (PF13518; HMM-score: 12.5)
    no clan defined RNase_Y_N; RNase Y N-terminal region (PF12072; HMM-score: 12.3)
    FAM60A; Protein Family FAM60A (PF15396; HMM-score: 9.8)
    Exonuc_VII_L; Exonuclease VII, large subunit (PF02601; HMM-score: 9.5)
    DUF4407; Domain of unknown function (DUF4407) (PF14362; HMM-score: 7.6)
    TMEM131_like; Transmembrane protein 131-like (PF19532; HMM-score: 6.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9801
    • Cytoplasmic Membrane Score: 0.0052
    • Cell wall & surface Score: 0.0108
    • Extracellular Score: 0.0038
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004489
    • TAT(Tat/SPI): 0.000371
    • LIPO(Sec/SPII): 0.001631
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ADM91389 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MSIEMTVSEIAEVLGLSRQAINNRVKELPEEDTDKNDKGVTVVTRSGLIKLEEIYKKTIFEDEPVSEDVKQRELMEILVDEKNAEILRLYEQLKAKDRQLSEKDEQMRIKDRQIAEKDKQLDQQQQLTLQAMKDQENLKLELDQAKEEVQSTKKGFFARLFGG

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SP670_1328&oldid=21339"